PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016458633.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

DBB

Protein Properties

Length: 317aa MW: 35302.6 Da PI: 7.1334

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016458633.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.8	9.3e-08	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +++ke++ fC ++ lC++C H+ H+ XP_016458633.1 4 QCDVCSKKEASVFCVADEAALCDSCDHRVHHAnklagkHQ 43 7**************************9964446777776 PP
2	zf-B_box	28.3	3.7e-09	54	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + + C+ ++e ++ lfC++++ lC++C +++Hk Ht XP_016458633.1 54 QVPLCDICQERRAFLFCQQDRAILCRECDTSIHKAneHT 92 6789*****************************878865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.623	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	4.45E-6	3	47	No hit	No description
Pfam	PF00643	8.5E-6	4	44	IPR000315	B-box-type zinc finger
SMART	SM00336	3.6E-8	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	3.7E-16	53	100	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.637	53	100	IPR000315	B-box-type zinc finger
Pfam	PF00643	9.4E-8	54	92	IPR000315	B-box-type zinc finger
CDD	cd00021	7.72E-12	56	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MKIQCDVCSK KEASVFCVAD EAALCDSCDH RVHHANKLAG KHQRFSLLQP SPKQVPLCDI 60 CQERRAFLFC QQDRAILCRE CDTSIHKANE HTQKHNRFLL TGVKLSANSA LYSSTESQST 120 TSSTNSLNTN QDSAQNLKSQ TSTKKPLPLP VPVSVSSNIS QEMTVAANDK GISCCNSQLV 180 NVEENSLTSS ISEYLEMLPG WHVEEFLNSS NIPNGFWKIG DNDVFPIWNT EIESNLNSFS 240 PESIGIWVPQ APAVATPQNQ TQIFTPQNLN FGGQIEFKNT KEVTSIKSSR KWRDDNSFAV 300 PQISPTSTSF KRSRTLW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009780919.1	0.0	PREDICTED: probable salt tolerance-like protein At1g75540
Refseq	XP_016458633.1	0.0	PREDICTED: B-box zinc finger protein 21-like
TrEMBL	A0A1S3Z2M7	0.0	A0A1S3Z2M7_TOBAC; B-box zinc finger protein 21-like
TrEMBL	A0A1U7X218	0.0	A0A1U7X218_NICSY; probable salt tolerance-like protein At1g75540
STRING	XP_009780919.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1463	23	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	8e-79	salt tolerance homolog2