PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016458365.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 373aa    MW: 42333.1 Da    PI: 6.6096
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016458365.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.83e-1088124541
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 
                     k+ rr+++NReAAr+sR+RKka++++Le+   +L + 
  XP_016458365.1  88 KVLRRLAQNREAARKSRLRKKAYVQQLENSKLKLIQL 124
                     789*************************865555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-782133No hitNo description
SMARTSM003381.2E-484144IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.85286130IPR004827Basic-leucine zipper domain
PfamPF001701.9E-788119IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.81E-688129No hitNo description
PROSITE patternPS00036091106IPR004827Basic-leucine zipper domain
PfamPF141447.7E-30175249IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MNSSTYTHFV ASRRMGICDS IHQLGMWDDF NGSFPSTSAT MILEVDKCLE DQIPLMEKRL  60
ENETEDTSHG TVGTSNRYEP ETSKPVEKVL RRLAQNREAA RKSRLRKKAY VQQLENSKLK  120
LIQLEQELER ARKQGLYAGG GLDASQLSYS VTASSGTAAF DMEYGHWVEE QTRQTNELRS  180
ALHSQIGEAE LRIIVDGYLS HYFDLFRMKA TAAKADVLYI MSGMWKTSAE RFFMWIGGFR  240
PSELLKVLTP HLELLTEQQL REVCNLTQSC QQAEDALSQG MVKLHQILAE AVAAGRLGEG  300
NYTLPQMGPA IEKLEALVRF VNQADHLRQE TLQQMSRILN TYQAAQGLLA LGEYFERLRV  360
LSSQWATRLR EPT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX164490.0X16449.1 Tobacco mRNA for TGA1a DNA-binding protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802013.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A
RefseqXP_016458365.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like
SwissprotP142320.0TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBLA0A1S3Z1T10.0A0A1S3Z1T1_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A-like
TrEMBLA0A1U7YFU60.0A0A1U7YFU6_NICSY; TGACG-sequence-specific DNA-binding protein TGA-1A
STRINGXP_009802013.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-163bZIP family protein
Publications ? help Back to Top
  1. Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J
    A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems.
    Plant Mol. Biol., 2000. 42(5): p. 679-88
    [PMID:10809441]
  2. Johnson C,Boden E,Desai M,Pascuzzi P,Arias J
    In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor.
    Plant J., 2001. 28(2): p. 237-43
    [PMID:11722767]
  3. Katagiri F,Seipel K,Chua NH
    Identification of a novel dimer stabilization region in a plant bZIP transcription activator.
    Mol. Cell. Biol., 1992. 12(11): p. 4809-16
    [PMID:1406663]
  4. Miao ZH,Lam E
    Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants.
    Plant J., 1995. 7(6): p. 887-96
    [PMID:7599649]
  5. Pascuzzi P,Hamilton D,Bodily K,Arias J
    Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor.
    J. Biol. Chem., 1998. 273(41): p. 26631-7
    [PMID:9756903]