PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016458240.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 283aa    MW: 32641.4 Da    PI: 10.4076
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016458240.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3361.2e-111952651688
                     EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS.S CS
              B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr.s 88 
                     +++p +fa+  g++k +  ++tl + +g++W+v +  +  + r+++++GW  F  +n++   g+++ Fkl++  +
  XP_016458240.1 195 VTIPMTFARWSGIIKMK--KITLINGEGKKWKVDI--EHIGPRVLIKGGWAAFRTQNKIAaNGETCRFKLIQGrR 265
                     69******999999655..8***************..999999****************989*******996424 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.79E-145107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-136105IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-79100No hitNo description
SMARTSM010196.7E-511105IPR003340B3 DNA binding domain
PfamPF023628.5E-82197IPR003340B3 DNA binding domain
PROSITE profilePS5086311.60322105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-12177264IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-13177263IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.784180281IPR003340B3 DNA binding domain
SMARTSM010190.0031183271IPR003340B3 DNA binding domain
PfamPF023622.7E-9195263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MLVDPDKYPS FCKLLFRQGF MDKILMPPVF IKENKKKLAK TCLLKTDIAA GMSWEAKIVK  60
ENSHFFICDG EWPKFVAHHK LKLGDILLFF LVDKSTFHIL PYGQKTCKNL CRRQLFEELS  120
SSSEEEEECD VGIRLSRKSK KVKTEPKELP GVAEEEAQNR SKENGPKTLR YSVVNLKNKN  180
PYYEMAVRKT HSLFVTIPMT FARWSGIIKM KKITLINGEG KKWKVDIEHI GPRVLIKGGW  240
AAFRTQNKIA ANGETCRFKL IQGRRRGRGR SCYVLQVEKI SKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016458240.10.0PREDICTED: putative B3 domain-containing protein At5g66980
TrEMBLA0A1S3Z1H20.0A0A1S3Z1H2_TOBAC; putative B3 domain-containing protein At5g66980
STRINGXP_009780425.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48881327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.17e-13B3 family protein