PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016457481.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 230aa MW: 25938.7 Da PI: 5.858 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83 | 1.9e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien+ rqvtfskRr+g++KKA+EL +LCdaev v++fs+tgkly ++s XP_016457481.1 9 KMIENTNSRQVTFSKRRQGLMKKAKELAILCDAEVGVLVFSNTGKLYQFAS 59 68***********************************************86 PP | |||||||
2 | K-box | 64.1 | 5e-22 | 85 | 173 | 12 | 100 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 a + ++q e++ L++e+ L++ q +l+G++Le L++k+LqqLe+qL +++ +++kK+++ll +ie++ +ek+++ en+aLr+++ee XP_016457481.1 85 AAEHESQPEVNELRAEVALLRQVQSRLMGKELEGLNFKDLQQLEHQLSEGILAVKDKKEQVLLGKIEKSLLQEKKVSLENEALREQIEE 173 33456899******************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.455 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.26E-41 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 1.09E-32 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.1E-26 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.9E-16 | 86 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.266 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 230 aa Download sequence Send to blast |
MGRGKIEIKM IENTNSRQVT FSKRRQGLMK KAKELAILCD AEVGVLVFSN TGKLYQFASS 60 SMENILSRYN KAPESSELTT IENVAAEHES QPEVNELRAE VALLRQVQSR LMGKELEGLN 120 FKDLQQLEHQ LSEGILAVKD KKEQVLLGKI EKSLLQEKKV SLENEALREQ IEELRRSSRH 180 CQERALGLEN SVCDSDTCLR LGLPVNTSQN MIIPKMESTS NDAQNPLVLE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-21 | 1 | 85 | 1 | 85 | MEF2C |
5f28_B | 2e-21 | 1 | 85 | 1 | 85 | MEF2C |
5f28_C | 2e-21 | 1 | 85 | 1 | 85 | MEF2C |
5f28_D | 2e-21 | 1 | 85 | 1 | 85 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016457481.1 | 1e-166 | PREDICTED: MADS-box transcription factor 23-like | ||||
Swissprot | Q9M2K8 | 1e-53 | AGL18_ARATH; Agamous-like MADS-box protein AGL18 | ||||
TrEMBL | A0A1S3YYR4 | 1e-164 | A0A1S3YYR4_TOBAC; MADS-box transcription factor 23-like | ||||
STRING | XP_009612621.1 | 1e-162 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57390.1 | 5e-56 | AGAMOUS-like 18 |