PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016457326.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 278aa MW: 31247.7 Da PI: 8.4626 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00065 | 216 | 238 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ +Fs+ L H ++ H XP_016457326.1 216 QCPQCHLRFSTIKALIDHVQKiH 238 7*****************99988 PP | |||||||
2 | zf-C2H2 | 15.4 | 5.2e-05 | 250 | 272 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+k F+++ L+ H + H XP_016457326.1 250 VCPRCSKGFRDPVALVEHVEReH 272 7*****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 2.22E-11 | 4 | 59 | No hit | No description |
PROSITE profile | PS51039 | 7.901 | 10 | 55 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 3.6E-10 | 11 | 53 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.0062 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 3.4E-12 | 13 | 51 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 1.2E-10 | 91 | 145 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 1.96E-9 | 93 | 147 | No hit | No description |
PROSITE profile | PS51039 | 7.97 | 98 | 145 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.0042 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 3.0E-8 | 101 | 141 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00355 | 0.022 | 215 | 238 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 217 | 238 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.016 | 249 | 277 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7.1 | 249 | 272 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 251 | 272 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGTPVFPNLG KHCSVEDCRL IDFLPFTCDC CHKVFCLEHR SYNRHECPTA NKNNVTVVIC 60 PLCAKGVRLI PDEDPNITWG SHVNTECDPS NYEKATKKKK CPVPRCRELL TFSNTIKCRD 120 CTVDHCLKHR FGPDHNCPGP KKPEPAFPFM NFLNGSKEEP KKPQSTSSSR WTTSLFKVVS 180 SVKEKLSSEF STTQQTGQSS RFTSHSGANT SSQVEQCPQC HLRFSTIKAL IDHVQKIHEK 240 NGVMNLTVDV CPRCSKGFRD PVALVEHVER EHKGTSKA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009789126.1 | 0.0 | PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13-like | ||||
Refseq | XP_016457326.1 | 0.0 | PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13-like | ||||
Swissprot | Q8VZ42 | 1e-116 | SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
TrEMBL | A0A1S3YYA6 | 0.0 | A0A1S3YYA6_TOBAC; zinc finger AN1 and C2H2 domain-containing stress-associated protein 13-like | ||||
TrEMBL | A0A1U7XHJ2 | 0.0 | A0A1U7XHJ2_NICSY; zinc finger AN1 and C2H2 domain-containing stress-associated protein 13-like | ||||
STRING | XP_009789126.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5311 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 1e-116 | C2H2 family protein |