PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016456972.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 322aa MW: 35108.3 Da PI: 6.1184

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016456972.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.7e-39	30	89	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+s XP_016456972.1 30 NQQVLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSKRS 89 68899****************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-25	29	83	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-33	32	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.665	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MQDIHPIGGG GGRFFGGGGD RRLRPNNHQN QQVLKCPRCD SPNTKFCYYN NYNLSQPRHF 60 CKSCRRYWTK GGVLRNVPVG GGCRKSKRSK PKPAPPSDAA AEAADEASEE HKSNSNSSSE 120 SSSLTATTTA AAAANTSGAA TAEVVSAASS NSASTFLNFH ESNFFLPTST NSSFDHQPLI 180 DHSAEGHIFQ DIGNFTNLMT SSNDPSVVGF NMMEMPAYRL PENQNSNEHW NQPAKMVGTD 240 QPVNDLKMEQ MDTGFMNQTG RVEFGLQQSR VNNNEIAPLD WQTGGGGGDG EHGLYDLTGT 300 VDQSYWSQTQ WSENDHSLNF LP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	10	18	GGRFFGGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016456972.1	0.0	PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBL	A0A1S3YYQ2	0.0	A0A1S3YYQ2_TOBAC; dof zinc finger protein DOF5.4-like
STRING	XP_009779672.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	4e-32	DOF zinc finger protein 1