PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016456924.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 184aa MW: 20943.2 Da PI: 9.1776

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016456924.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.5	2e-07	17	67	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + +Er+RR ++ ++L +l+P+ +k++ + ls + + +++ YI +L+ XP_016456924.1 17 KTVERNRRIYMKYLCSKLISLIPPhHFKPSTEMLSQQDQVDQTITYIEQLK 67 679*******************777655555**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.702	11	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-7	15	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-8	17	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MKSSSKYNIS SEKPDRKTVE RNRRIYMKYL CSKLISLIPP HHFKPSTEML SQQDQVDQTI 60 TYIEQLKERV EVLKRRKDEL VAQGTGERSS TSKKVMTTCT LETPAVEVRE LGSTLEVILI 120 SGLKKNFALQ EVINVLEEEG AQVVTAHFST ICDKVFYTIH AQVKITRLGI DASTVQLRLQ 180 NLVC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009618665.1	1e-133	PREDICTED: transcription factor ORG3-like
Refseq	XP_016456924.1	1e-133	PREDICTED: transcription factor ORG3-like
TrEMBL	A0A1S3YXK0	1e-132	A0A1S3YXK0_TOBAC; transcription factor ORG3-like
STRING	XP_009618665.1	1e-133	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6083	14	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-29	bHLH family protein