PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016456548.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 296aa MW: 32331.2 Da PI: 6.7236

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016456548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.1	4.9e-34	11	65	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl XP_016456548.1 11 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 65 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.167	8	68	IPR017930	Myb domain
SuperFamily	SSF46689	1.24E-17	10	65	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-32	10	66	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-25	11	66	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-9	13	64	IPR001005	SANT/Myb domain
Pfam	PF14379	2.7E-23	98	144	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MEPINPSLAG KQRLRWTHEL HERFVDAVAQ LGGPDRATPK GVLRVMGVQG LTIYHVKSHL 60 QKYRLAKYLP DSSSDGKNSD KKESGDMLCS LDGSSAGVQI NEALKLQMEV QKRLHEQLEV 120 QRQLQLRIEA QGKYLKKIIE EQQRLSGVLS EVPVSGVTPP AAENGPESDN RTDPGTPAPT 180 SESPLVDKPV QEHAPTKSLS IDQSFSSSQH EPLTPDSGCR ETSPINSPEG ERSSKKQRVC 240 AFTKADTLLP HQILESSLSS QYQQSNPVVF LASDQFNLSS GLTLGNEGSK ISGSNM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-25	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-25	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-25	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-25	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-25	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-25	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-25	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-25	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT014462	0.0	BT014462.1 Lycopersicon esculentum clone 133809F, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016456548.1	0.0	PREDICTED: myb family transcription factor APL-like
Refseq	XP_016456549.1	0.0	PREDICTED: myb family transcription factor APL-like
Swissprot	Q9SJW0	1e-120	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A1S3YWL9	0.0	A0A1S3YWL9_TOBAC; myb family transcription factor APL-like
STRING	XP_009776486.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2796	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-83	G2-like family protein