PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016456449.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27238.2 Da    PI: 9.75
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016456449.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.41.8e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCdaev +iifsstgklye+ss
  XP_016456449.1 10 RIDNTTSRQVTFSKRRNGLLKKAKELAILCDAEVGLIIFSSTGKLYEFSS 59
                    9***********************************************96 PP
2K-box78.81.4e-26841701298
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +  + +q+e+a L+++++ Lq+++R+llGe+L+ L +k+L +Le+qLe slk +R++K+++l+++i+el +k + +++en +L kk+
  XP_016456449.1  84 SGVKFWQREVASLRQQLHYLQENHRRLLGEELSGLGIKDLTNLENQLEMSLKGVRKQKEQILTDEIRELNQKGNLIHQENIELYKKV 170
                     55789*******************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.665161IPR002100Transcription factor, MADS-box
CDDcd002651.92E-43278No hitNo description
SuperFamilySSF554551.24E-32279IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.49386176IPR002487Transcription factor, K-box
PfamPF014862.3E-2586170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRGKVVIQR IDNTTSRQVT FSKRRNGLLK KAKELAILCD AEVGLIIFSS TGKLYEFSSN  60
SMMAIIDRYN KMKEEHHNLM SPMSGVKFWQ REVASLRQQL HYLQENHRRL LGEELSGLGI  120
KDLTNLENQL EMSLKGVRKQ KEQILTDEIR ELNQKGNLIH QENIELYKKV NLIRQENTEL  180
RKKVSEEGFG SEPNGGVQAT HAISNGYDVH APISLQLSQP QTQKSETATS VMQLGLQLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-20176176MEF2C
5f28_B2e-20176176MEF2C
5f28_C2e-20176176MEF2C
5f28_D2e-20176176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3705280.0AY370528.1 Petunia x hybrida MADS-box protein 14 (PMADS14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016456449.11e-176PREDICTED: MADS-box transcription factor 23-like
SwissprotQ6EP491e-100MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1S3YWD61e-174A0A1S3YWD6_TOBAC; MADS-box transcription factor 23-like
STRINGXP_009790407.11e-175(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.19e-91AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]