PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016454064.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 334aa MW: 38472.6 Da PI: 7.2735

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016454064.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101	7.7e-32	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++F++a+++LGG++kAtPk +l++m+v gLt++hvkSHLQ+YR+ XP_016454064.1 19 PRLRWTPDLHHCFLHAIDKLGGQDKATPKLVLQMMDVRGLTISHVKSHLQMYRS 72 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-30	15	75	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.635	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	2.69E-15	17	74	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.1E-24	19	73	IPR006447	Myb domain, plants
Pfam	PF00249	3.0E-8	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MGNCGRNRGV RQYIRSKVPR LRWTPDLHHC FLHAIDKLGG QDKATPKLVL QMMDVRGLTI 60 SHVKSHLQMY RSMKSEVNRQ DRNSTQQRKQ SLENHHDCHQ EEEGCAEQQR HMVYNPSFSP 120 MERSDSPYFN SVQPTKRARI ETTNCSQRIR EAVANRYSKD DYIHSMADKS VVKERTKEGE 180 NGFIWQQTCG ETERERETAH PALCNSTHFS LPQDFFQSFN PQVQESDIFK AAKQQDSKRE 240 SSKKCKFEGS RKIENAGEEE EEEKEDGDCR LSLALSVHHP SIQRSNTSST ISEISEAISS 300 YSGSNLNHHE YHWLSSSEKH SVINLDLSIA LCSE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-16	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	2e-44	HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBank	HG975516	2e-44	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016454064.1	0.0	PREDICTED: putative Myb family transcription factor At1g14600 isoform X2
TrEMBL	A0A1S3YP94	0.0	A0A1S3YP94_TOBAC; putative Myb family transcription factor At1g14600 isoform X2
STRING	XP_009766440.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	3e-33	G2-like family protein