PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016454036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 450aa MW: 51408.3 Da PI: 8.2632 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.1 | 1.8e-14 | 16 | 94 | 9 | 99 |
HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +k++ l +pk f+ ++ +g + + ++ + g++W vk+ + y +++GW eF+++n L+ gD++vF+++g+ ef v +f++ XP_016454036.1 16 PGFKHA-LKIPKGFM-KYlKGHE---LEHVVLRRAGKKWLVKV--ND----YQFKTGWGEFAEENVLQLGDMLVFRHEGNVEF--EVIIFDS 94 455555.********.6645553...35677889*********..55....559**********************9998777..7777775 PP | |||||||
2 | B3 | 51.4 | 2e-16 | 194 | 273 | 5 | 88 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 +++++ l+ g l+lp +fa++ ++k ++ +l ++de+ rsW+vkl+ + +++r+ +++GW+eF +n Lk+g+ ++F+++++ XP_016454036.1 194 TIRPYCLTYGYLCLPQQFANSLSNK-KC--DLFIRDERQRSWNVKLS-SDCKNRVSIGDGWREFIADNCLKVGERIMFEVVSDG 273 5678999999*********888644.35..7***************5.788889*************************87653 PP | |||||||
3 | B3 | 62.7 | 5.9e-20 | 352 | 431 | 5 | 87 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ++++++ ++ rl+lp +fa+++g+ +++ +++l+de+ rsW+v+l ++ ++ +t+GWk+Fvkan++++gD++ F+l+++ XP_016454036.1 352 TIKPYSINKPRLYLPADFAKSNGLMNRR-CEMILTDEKQRSWSVQL--GLTGHHVAITRGWKKFVKANDVQVGDTFKFELINN 431 5688999999************887655.59***************..88888899***********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.9E-21 | 4 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.943 | 7 | 95 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.06E-19 | 7 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.06E-17 | 8 | 93 | No hit | No description |
SMART | SM01019 | 1.1E-13 | 10 | 95 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.2E-12 | 18 | 93 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.6E-18 | 186 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-16 | 187 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.3E-9 | 190 | 283 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.843 | 190 | 287 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-14 | 194 | 274 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.48E-11 | 203 | 268 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.7E-23 | 342 | 439 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.37E-22 | 343 | 439 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.00E-19 | 347 | 441 | No hit | No description |
PROSITE profile | PS50863 | 14.353 | 348 | 442 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-19 | 349 | 446 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-18 | 352 | 431 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MKVRPVKPHF FKPIQPGFKH ALKIPKGFMK YLKGHELEHV VLRRAGKKWL VKVNDYQFKT 60 GWGEFAEENV LQLGDMLVFR HEGNVEFEVI IFDSSQCDRE YAEYLQEEEE AATRTFGEIS 120 KNFEFEDTNN YTSIPSGDRL YGSLPSTSCP LSHSRAIDDV IEIPSLNIKS SDEDSSHAEA 180 ATDKHAGHSH FICTIRPYCL TYGYLCLPQQ FANSLSNKKC DLFIRDERQR SWNVKLSSDC 240 KNRVSIGDGW REFIADNCLK VGERIMFEVV SDGKMESIWK FHVVTDAETP KQKFQDLRAN 300 ASLQPEGKKP DLDANRYSAR GLRIETSDMT APKAQVHAST SANNANPHFI STIKPYSINK 360 PRLYLPADFA KSNGLMNRRC EMILTDEKQR SWSVQLGLTG HHVAITRGWK KFVKANDVQV 420 GDTFKFELIN NGTIPIAYFH CLFATTRRFA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016454036.1 | 0.0 | PREDICTED: B3 domain-containing protein REM10-like isoform X1 | ||||
TrEMBL | A0A1S3YP49 | 0.0 | A0A1S3YP49_TOBAC; B3 domain-containing protein REM10-like isoform X1 | ||||
STRING | XP_009781490.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 3e-29 | B3 family protein |