PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016454030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 580aa MW: 66474.2 Da PI: 9.9499 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.1 | 9.1e-15 | 14 | 94 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +k++ l +pk f+ ++ +g ++e + + +++W vkl ++++ l++GW++F+++++L+ gD ++F+++g++ef v++f++ XP_016454030.1 14 I--QPGFKRA-LKIPKGFL-KYlKGHEHE---HAVLKRGSKKWLVKL--NGQR----LEEGWEKFAEEHDLRLGDLLIFRHEGEMEF--EVTIFDS 94 4..4556666.9*******.564666444...57778899*******..8887....***********************9999999..9999986 PP | |||||||
2 | B3 | 44.3 | 3.2e-14 | 140 | 221 | 5 | 89 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +++s+ +++g ++lp kf++++g + ++ l+++de+ rsW++kl + +++++++ W eF +an++k+gD ++Fk++ + e XP_016454030.1 140 TVRSYCFSKGYFRLPVKFTKANGFRN-KKYGLIIRDERQRSWNLKL--YTSYSQVYIGGKWGEFRDANDIKVGDRIMFKVVANGE 221 57899*****************5543.4467***************..66667889***********************887533 PP | |||||||
3 | B3 | 55 | 1.5e-17 | 285 | 371 | 5 | 96 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++++++l+++ l++p +fa++hg+ ++ t++++d + rsW+++l +++ +++++GW +F+ an LkegD v+F + +++++ +k+ XP_016454030.1 285 TMKPYNLSKCFLRVPSPFARQHGLRDRK-CTIMIRD-EQRSWTFTL--YSCGKVTYIGGGWHDFCIANCLKEGDRVMFGIVA-NGEKPILKF 371 6799******************999766.5999999.779******..899999*************************876.555566665 PP | |||||||
4 | B3 | 55.5 | 1e-17 | 429 | 516 | 3 | 96 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +++ ++++l+++ l +p +fa++hg+ + t+++ d + rsW+++l +++ +++++GW+eF+ an LkegD v+F+ + +++++ +k+ XP_016454030.1 429 STM-KPYYLSKRFLHVPSPFARQHGLGDGRC-TIMISD-EQRSWTFNL--YSCGRFTYIGGGWREFCVANYLKEGDRVMFEIVA-NGEKPILKF 516 444.778888888***********7775553.666555.88*******..999999*************************877.555566665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-21 | 4 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-19 | 5 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.294 | 7 | 95 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.92E-15 | 8 | 93 | No hit | No description |
SMART | SM01019 | 1.3E-16 | 10 | 95 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-10 | 19 | 94 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.8E-13 | 134 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.87E-15 | 136 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.3E-9 | 136 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.265 | 136 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-12 | 140 | 223 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.18E-10 | 142 | 215 | No hit | No description |
SuperFamily | SSF101936 | 5.69E-20 | 277 | 371 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.3E-20 | 278 | 371 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.26E-15 | 280 | 373 | No hit | No description |
PROSITE profile | PS50863 | 10.969 | 281 | 374 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.6E-15 | 281 | 375 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.5E-15 | 284 | 372 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-20 | 423 | 516 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.08E-19 | 423 | 516 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.77E-15 | 425 | 518 | No hit | No description |
PROSITE profile | PS50863 | 11.899 | 426 | 519 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.5E-16 | 427 | 520 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-15 | 428 | 517 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 580 aa Download sequence Send to blast |
MKVRPAKPHF FKPIQPGFKR ALKIPKGFLK YLKGHEHEHA VLKRGSKKWL VKLNGQRLEE 60 GWEKFAEEHD LRLGDLLIFR HEGEMEFEVT IFDSSHCDRE YAEYLQDEEE AHIVKDPSKK 120 FEIKEAAPQN PIGQSHVVCT VRSYCFSKGY FRLPVKFTKA NGFRNKKYGL IIRDERQRSW 180 NLKLYTSYSQ VYIGGKWGEF RDANDIKVGD RIMFKVVANG ERPIWKFHNL RKNASLQPEG 240 KNNSDIERVS TPEKPKSNII SSCKAVPNVE AAKDLHLGHP HFICTMKPYN LSKCFLRVPS 300 PFARQHGLRD RKCTIMIRDE QRSWTFTLYS CGKVTYIGGG WHDFCIANCL KEGDRVMFGI 360 VANGEKPILK FHDLRENASF QPEGKKTNSD TERVSTQEKP KSNIISSRKA VPNVEAAKDV 420 HLSQPHFIST MKPYYLSKRF LHVPSPFARQ HGLGDGRCTI MISDEQRSWT FNLYSCGRFT 480 YIGGGWREFC VANYLKEGDR VMFEIVANGE KPILKFHDLR GNASLQPEGK KINLDAKNVS 540 TQGITDLTIQ TSNVTARKAQ VPASTSVDNA NTKTTLVYTM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 2e-61 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009781505.1 | 0.0 | PREDICTED: B3 domain-containing protein REM14-like isoform X1 | ||||
Refseq | XP_009781513.1 | 0.0 | PREDICTED: B3 domain-containing protein REM14-like isoform X1 | ||||
Refseq | XP_009781519.1 | 0.0 | PREDICTED: B3 domain-containing protein REM14-like isoform X1 | ||||
Refseq | XP_009781527.1 | 0.0 | PREDICTED: B3 domain-containing protein REM14-like isoform X1 | ||||
Refseq | XP_016454029.1 | 0.0 | PREDICTED: B3 domain-containing protein REM14-like isoform X1 | ||||
Refseq | XP_016454030.1 | 0.0 | PREDICTED: B3 domain-containing protein REM14-like isoform X1 | ||||
Refseq | XP_016454031.1 | 0.0 | PREDICTED: B3 domain-containing protein REM14-like isoform X1 | ||||
Refseq | XP_016454032.1 | 0.0 | PREDICTED: B3 domain-containing protein REM14-like isoform X1 | ||||
Refseq | XP_016454033.1 | 0.0 | PREDICTED: B3 domain-containing protein REM14-like isoform X1 | ||||
Refseq | XP_016454034.1 | 0.0 | PREDICTED: B3 domain-containing protein REM14-like isoform X1 | ||||
TrEMBL | A0A1S3YP65 | 0.0 | A0A1S3YP65_TOBAC; B3 domain-containing protein REM14-like isoform X1 | ||||
TrEMBL | A0A1U7X3S6 | 0.0 | A0A1U7X3S6_NICSY; B3 domain-containing protein REM14-like isoform X1 | ||||
STRING | XP_009781505.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00260.1 | 5e-56 | B3 family protein |