PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016453991.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 293aa MW: 33215.4 Da PI: 9.7894 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.4 | 1.1e-17 | 142 | 232 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v + +l lp +f+e+h ++++++ l de+g ++e + +k+ + l++GW+ F+ +++L++gD +vF+l++ ++f +v XP_016453991.1 142 FIKSMVRSHVYSCFWLGLPTRFCEDHLP--KSTVDVLLVDEEGSEYEALF--IGKRTG--LSGGWRAFALDHKLDDGDALVFELVEATKF--KVY 228 89************************53..37899***************..555544..***********************9987777..888 PP EE-S CS B3 96 vfrk 99 ++r+ XP_016453991.1 229 IVRA 232 8876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.7E-22 | 134 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-24 | 136 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.88E-26 | 140 | 231 | No hit | No description |
Pfam | PF02362 | 8.3E-16 | 142 | 232 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.422 | 142 | 233 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.4E-23 | 142 | 233 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 293 aa Download sequence Send to blast |
MANENGTNSY EEVRRQRVLD NKKRFEDLGI LNISKNLSDL AKSEKKSEKK YEVTRVRQKA 60 NDVYMLEPRR SGRARNPVPS YRDDIDMELP SFRKRSKLSS SWASYLARPL EEVKLASCQE 120 RAQAIKSAEK LQSNLQSGNP SFIKSMVRSH VYSCFWLGLP TRFCEDHLPK STVDVLLVDE 180 EGSEYEALFI GKRTGLSGGW RAFALDHKLD DGDALVFELV EATKFKVYIV RASDCSSRED 240 KSGAEKGENE AEETSKSVTK KRKKSSNQSE VPTAAKEEIS VVASATRRST RRK |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 259 | 263 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016453991.1 | 0.0 | PREDICTED: putative B3 domain-containing protein At5g58280 | ||||
Swissprot | Q9FHB2 | 8e-69 | Y5828_ARATH; Putative B3 domain-containing protein At5g58280 | ||||
TrEMBL | A0A1S3YNZ1 | 0.0 | A0A1S3YNZ1_TOBAC; putative B3 domain-containing protein At5g58280 | ||||
STRING | XP_009590905.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12510 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58280.1 | 3e-70 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|