PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016453972.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bZIP | ||||||||
Protein Properties | Length: 503aa MW: 56825.9 Da PI: 7.0973 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.2 | 1.1e-10 | 215 | 250 | 5 | 40 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 k rr+++NReAAr+sR+RKka++++Le L++ XP_016453972.1 215 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLTQ 250 7789***********************985555544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 9.5E-9 | 207 | 257 | No hit | No description |
SMART | SM00338 | 1.2E-7 | 211 | 277 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.266 | 213 | 257 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.88E-7 | 215 | 257 | No hit | No description |
CDD | cd14708 | 2.96E-22 | 215 | 267 | No hit | No description |
Pfam | PF00170 | 7.2E-8 | 215 | 253 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 218 | 233 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 9.4E-32 | 303 | 377 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MGFERAFVES SPEQENKLFV GVSYMDSSNK NQDPLESNNQ ISFGGQHQHH QQQFFYNHHQ 60 QQQLQNNNQI SFGMMQQSSS AIPGSLISKD SAGAYDLGEL DQALFQYLDG QDPSSIQEQR 120 QNSGMRPPTL NIFPSQPMHV EPSTTNTMNT GLVSPAMSGS KRSSQPSMEL SNNLKNNDAP 180 SASGPEPPKA AKREGNRKGP TSSSEQDGPK TPDPKTLRRL AQNREAARKS RLRKKAYVQQ 240 LESSRIRLTQ LEQELQRARA QGYYFGGNSL LGGEKNLPVN MGNMSSVFDM EYARWLEEHH 300 RLMCELRNAV QEHFLENELR IYVDNCVTHY DEIMNLKSML AKSDVFHLVS GMWKTPAERC 360 FMWMGGFRPS ELLKIILSQI EPLTEQQLMG ICGLQQSTQE AEDALSQGLE ALNHSLSDTI 420 ASDALSCPQN MANYMGQMAL AMNKLSTLEG FVRQADNLRH QTIHRLHQLL TTRQAARCFL 480 AIAEYFHRLR ALSSLWLARP RQE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00491 | DAP | Transfer from AT5G06839 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q52MZ2 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY998018 | 0.0 | AY998018.1 Nicotiana tabacum TGA10 transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016453972.1 | 0.0 | PREDICTED: transcription factor HBP-1b(c38)-like isoform X2 | ||||
Swissprot | Q52MZ2 | 0.0 | TGA10_TOBAC; bZIP transcription factor TGA10 | ||||
TrEMBL | A0A1S3YPL2 | 0.0 | A0A1S3YPL2_TOBAC; transcription factor HBP-1b(C38)-like isoform X2 | ||||
STRING | XP_009611363.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06839.3 | 0.0 | bZIP family protein |
Publications ? help Back to Top | |||
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