PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016453970.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 506aa MW: 57083.1 Da PI: 6.9577

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016453970.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.1e-10	215	250	5	40
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 k rr+++NReAAr+sR+RKka++++Le L++ XP_016453970.1 215 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLTQ 250 7789***********************985555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.6E-9	207	257	No hit	No description
SMART	SM00338	3.7E-8	211	290	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.266	213	257	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.94E-7	215	257	No hit	No description
CDD	cd14708	2.73E-22	215	267	No hit	No description
Pfam	PF00170	7.2E-8	215	253	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	218	233	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.5E-32	306	380	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MGFERAFVES SPEQENKLFV GVSYMDSSNK NQDPLESNNQ ISFGGQHQHH QQQFFYNHHQ 60 QQQLQNNNQI SFGMMQQSSS AIPGSLISKD SAGAYDLGEL DQALFQYLDG QDPSSIQEQR 120 QNSGMRPPTL NIFPSQPMHV EPSTTNTMNT GLVSPAMSGS KRSSQPSMEL SNNLKNNDAP 180 SASGPEPPKA AKREGNRKGP TSSSEQDGPK TPDPKTLRRL AQNREAARKS RLRKKAYVQQ 240 LESSRIRLTQ LEQELQRARA QGYYFGGNSL LGGEKNLPVN MGNMSSDAAV FDMEYARWLE 300 EHHRLMCELR NAVQEHFLEN ELRIYVDNCV THYDEIMNLK SMLAKSDVFH LVSGMWKTPA 360 ERCFMWMGGF RPSELLKIIL SQIEPLTEQQ LMGICGLQQS TQEAEDALSQ GLEALNHSLS 420 DTIASDALSC PQNMANYMGQ MALAMNKLST LEGFVRQADN LRHQTIHRLH QLLTTRQAAR 480 CFLAIAEYFH RLRALSSLWL ARPRQE

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MGFERAFVES SPEQENKLFV GVSYMDSSNK NQDPLESNNQ ISFGGQHQHH QQQFFYNHHQ  60
QQQLQNNNQI SFGMMQQSSS AIPGSLISKD SAGAYDLGEL DQALFQYLDG QDPSSIQEQR  120
QNSGMRPPTL NIFPSQPMHV EPSTTNTMNT GLVSPAMSGS KRSSQPSMEL SNNLKNNDAP  180
SASGPEPPKA AKREGNRKGP TSSSEQDGPK TPDPKTLRRL AQNREAARKS RLRKKAYVQQ  240
LESSRIRLTQ LEQELQRARA QGYYFGGNSL LGGEKNLPVN MGNMSSDAAV FDMEYARWLE  300
EHHRLMCELR NAVQEHFLEN ELRIYVDNCV THYDEIMNLK SMLAKSDVFH LVSGMWKTPA  360
ERCFMWMGGF RPSELLKIIL SQIEPLTEQQ LMGICGLQQS TQEAEDALSQ GLEALNHSLS  420
DTIASDALSC PQNMANYMGQ MALAMNKLST LEGFVRQADN LRHQTIHRLH QLLTTRQAAR  480
CFLAIAEYFH RLRALSSLWL ARPRQE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269\|PubMed:12777042}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00491	DAP	Transfer from AT5G06839	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Interaction ? help Back to Top
Source	Intact With
IntAct	Search Q52MZ2

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY998018	0.0	AY998018.1 Nicotiana tabacum TGA10 transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016453970.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
Swissprot	Q52MZ2	0.0	TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBL	A0A1S3YPP9	0.0	A0A1S3YPP9_TOBAC; transcription factor HBP-1b(C38)-like isoform X1
STRING	XP_009611363.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2279	21	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	0.0	bZIP family protein

Publications ? help Back to Top
Schiermeyer A,Thurow C,Gatz C Tobacco bZIP factor TGA10 is a novel member of the TGA family of transcription factors. Plant Mol. Biol., 2003. 51(6): p. 817-29 [PMID:12777042] Ndamukong I, et al. SA-inducible Arabidopsis glutaredoxin interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription. Plant J., 2007. 50(1): p. 128-39 [PMID:17397508]