PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016453843.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 353aa    MW: 40235.9 Da    PI: 9.4555
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016453843.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.81.7e-26120181159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgynWrKYGq+ + g++fprsYYrC +    gC + k+v+rs+++p+++eitY+g H+++
  XP_016453843.1 120 LDDGYNWRKYGQRCILGAKFPRSYYRCKYWilqGCLANKQVQRSDDNPSAFEITYKGFHTCH 181
                     59**************************97778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.125115178IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.5E-26116182IPR003657WRKY domain
SuperFamilySSF1182901.12E-24119182IPR003657WRKY domain
SMARTSM007743.6E-32120182IPR003657WRKY domain
PfamPF031064.5E-24121181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDYGFNLDYN SLINELTQGM EHTKKLKAYF NSVTSTSEAT PQLLLQKILS SYEQSLLLLK  60
WSGSAVQSPQ PLPPTSDDMN KRCFNDQSEL IDISKRSKKS QPTRTGQVRF ITKGGSEGSL  120
DDGYNWRKYG QRCILGAKFP RSYYRCKYWI LQGCLANKQV QRSDDNPSAF EITYKGFHTC  180
HQVTNSALRP TSVEKQVYHP TKQSNEVLMN LRVNTNNLDD NRTSRAFTIF GLSEKSKFSD  240
SHDDNLIGGY SPSFVSPTTT ESTYFPVSCQ MTGFGIVHNL QHSESYLSDI GIVQNLHHSD  300
SDRTDIFSTN TSTTSSSTRG IDVKWAEFRQ DNMFDREKKK KRKRRGGRKD HTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-16119180768OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1334340DREKKKK
2337342KKKKRK
3338344KKKRKRR
4339344KKRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453843.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1S3YP120.0A0A1S3YP12_TOBAC; probable WRKY transcription factor 41
STRINGXP_009628596.11e-134(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.17e-39WRKY DNA-binding protein 30