PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016453597.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 238aa MW: 26855.1 Da PI: 7.1371 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.7 | 2.6e-33 | 44 | 97 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt++LH++Fv+ave+LGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+ XP_016453597.1 44 PRLRWTQDLHRSFVHAVERLGGEDRATPKMVLQLMDVKGLTISHVKSHLQMYRS 97 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.39 | 40 | 100 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-31 | 40 | 99 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.04E-15 | 43 | 98 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-24 | 44 | 98 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-7 | 45 | 96 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MMKEPLEFSE SSSKNSPCLS IEEKLKDHSN KSGGVRPYVR SQMPRLRWTQ DLHRSFVHAV 60 ERLGGEDRAT PKMVLQLMDV KGLTISHVKS HLQMYRSMKH EQMMQAEAEA ANGGKRNRMD 120 GAANGNYHHY YNINDKAFFG AHPWKHMQET KENRIMGLEG KSNYYTMFRD IFNGHNVQDV 180 GDGNKVVREA SSLSNKSPSA SIIETTGEED FSSSTMSLDL EPSASLDVNN ISLELTLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-18 | 45 | 100 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-18 | 45 | 100 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-18 | 45 | 100 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-18 | 45 | 100 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-18 | 45 | 100 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-18 | 45 | 100 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-18 | 45 | 100 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-18 | 45 | 100 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-18 | 45 | 100 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-18 | 45 | 100 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-18 | 45 | 100 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-18 | 45 | 100 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016453597.1 | 1e-180 | PREDICTED: putative two-component response regulator ARR13 | ||||
TrEMBL | A0A1S3YNK6 | 1e-178 | A0A1S3YNK6_TOBAC; putative two-component response regulator ARR13 | ||||
STRING | XP_009623365.1 | 1e-173 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7450 | 20 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 2e-34 | G2-like family protein |