PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016453350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 212aa MW: 24778.5 Da PI: 9.38 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95 | 3.2e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++gklye+ss XP_016453350.1 9 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPKGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 70.7 | 4.5e-24 | 84 | 173 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ +++e+l++e+a + +++e L+ ++R+llGe+L+s s+ eLqq+e+qLe+sl+ iR++Kn l++eqi +l++ ek l ++n +L+k+ XP_016453350.1 84 ADIQTTEHLKEEIATMTRKLEFLEDSKRKLLGEGLDSSSYDELQQVEEQLERSLSCIRARKNLLFREQIAHLKEEEKFLMKQNADLKKRC 173 556789********************************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.763 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.5E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.66E-42 | 3 | 72 | No hit | No description |
SuperFamily | SSF55455 | 2.49E-32 | 3 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.2E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-22 | 87 | 173 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.786 | 89 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MVRGKTEMKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSP KGKLYEFSSS 60 STNKTIERYK KNDKYLGLNR SKIADIQTTE HLKEEIATMT RKLEFLEDSK RKLLGEGLDS 120 SSYDELQQVE EQLERSLSCI RARKNLLFRE QIAHLKEEEK FLMKQNADLK KRCEVLPQLM 180 TTVPQEKEDT ERQTMEVETE LFIGLPQRQR SH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 4e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 4e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 4e-18 | 1 | 69 | 1 | 69 | MEF2C |
6byy_A | 3e-18 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 3e-18 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 3e-18 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 3e-18 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 4e-18 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 4e-18 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 4e-18 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 4e-18 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244195 | 1e-72 | AC244195.1 Solanum lycopersicum strain Heinz 1706 chromosome 8 clone hba-6a9 map 8, complete sequence. | |||
GenBank | HG975447 | 1e-72 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. | |||
GenBank | HG975520 | 1e-72 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009777750.1 | 1e-153 | PREDICTED: agamous-like MADS-box protein AGL19 isoform X1 | ||||
Refseq | XP_016453350.1 | 1e-153 | PREDICTED: agamous-like MADS-box protein AGL19 | ||||
Swissprot | Q9XJ60 | 5e-72 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | A0A1S3YN41 | 1e-152 | A0A1S3YN41_TOBAC; agamous-like MADS-box protein AGL19 | ||||
TrEMBL | A0A1U7WU42 | 1e-152 | A0A1U7WU42_NICSY; agamous-like MADS-box protein AGL19 isoform X1 | ||||
STRING | XP_009777750.1 | 1e-152 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22950.1 | 9e-74 | AGAMOUS-like 19 |