PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016451623.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 321aa MW: 36622.8 Da PI: 9.5997

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016451623.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.5	1.8e-55	18	144	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL kkv ++++ + +i evd++kvePwdLp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke+++ XP_016451623.1 18 LPPGFRFHPTDEELITHYLSKKVVDNNFFA-IAIGEVDMNKVEPWDLPWKAKMGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDKEIFR- 110 79***********************877.78***********888999************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfy+grapkgekt+Wv+heyrle XP_016451623.1 111 GKSLVGMKKTLVFYRGRAPKGEKTNWVIHEYRLE 144 999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.94E-62	15	168	IPR003441	NAC domain
PROSITE profile	PS51005	57.802	18	168	IPR003441	NAC domain
Pfam	PF02365	1.0E-28	19	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MENILGPVVK EEDQQLQLPP GFRFHPTDEE LITHYLSKKV VDNNFFAIAI GEVDMNKVEP 60 WDLPWKAKMG EKEWYFFCVR DKKYPTGLRT NRATAAGYWK ATGKDKEIFR GKSLVGMKKT 120 LVFYRGRAPK GEKTNWVIHE YRLEGRLSLQ NLPKTAKNDW VISRVFYKST GGNKVHISGL 180 MRLNSTEIEM GNSVLPTLKD SESSHVHCFS NFVSAQKSQK EMTNCFNIST SIPSLPNKFA 240 LNQTLPPQGN LLNPGSFPMQ GPPSLRNLYQ NHGQNMVQNL KKEKEIVSLS QETVVSTDMN 300 NEFFSSAAVV GPQYLDYLWN Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-53	9	174	6	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-53	9	174	6	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-53	9	174	6	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-53	9	174	6	171	NO APICAL MERISTEM PROTEIN
4dul_A	3e-53	9	174	6	171	NAC domain-containing protein 19
4dul_B	3e-53	9	174	6	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF510215	0.0	AF510215.1 Petunia x hybrida nam-like protein 18 (NH18) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009591138.1	0.0	PREDICTED: NAC domain-containing protein 100-like isoform X2
Refseq	XP_016451623.1	0.0	PREDICTED: NAC domain-containing protein 100-like isoform X2
Swissprot	Q9FLJ2	1e-118	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1S3YHW2	0.0	A0A1S3YHW2_TOBAC; NAC domain-containing protein 100-like isoform X2
STRING	XP_009591137.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-120	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]