PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016451477.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 451aa    MW: 50862.6 Da    PI: 5.3014
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016451477.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix704.5e-22126222185
        trihelix   1 rWtkqevlaLiearremeerlr.rgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                     +Wt++ v++Li+++  ++++ + +g           +kk++W+ vs+ m++ g+++sp+qC++k+++lnkrykk++++ +++ ++ ++++ ++ d
  XP_016451477.1 126 KWTDNVVRLLIQVVACVGDDGSlEGTeglkrksgciQKKGKWKTVSRIMMSNGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCAVVENPVLMD 220
                     7**************777777632224555667889**********************************************5588998888888 PP

        trihelix  84 ql 85 
                     ++
  XP_016451477.1 221 SM 222
                     77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.1E-19124249No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MNSSGMSGGF LSGYNGGFLG MNRLQQPQLN SNNAAHGHQT NHNNVQSSMS TKLGLENDKP  60
IGLIDVKSCM PFGKDKAVGP SNVVNNSNNP NNNTSDEDEP SFTEDGNGDN NGGALEKKGS  120
PWQRMKWTDN VVRLLIQVVA CVGDDGSLEG TEGLKRKSGC IQKKGKWKTV SRIMMSNGCH  180
VSPQQCEDKF NDLNKRYKKL NDILGRGTSC AVVENPVLMD SMPQLSAKAK DTVKKILNSK  240
HLFYREMCAY HNGQKIPDCN DLEFPVHSSP VAAECAKDNN GSQGDEAEEN DESDDDDELD  300
DEEDNHGVDE RMRRVEESGS FLPHTSGNDN FVAEINEFFQ DPTKSKWEQK MWIKKRMLQL  360
EEENIGIQAE ALELEKRQFK WQRFCRKKDR ELEIERLENE KLILENEHMS LQLKHKELEI  420
DSKKPNISFN SAPLSIDRPR GRDQIDAARY H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628855.10.0PREDICTED: uncharacterized protein LOC104119138
RefseqXP_016451477.10.0PREDICTED: uncharacterized protein LOC107776119
TrEMBLA0A1S3YHR40.0A0A1S3YHR4_TOBAC; uncharacterized protein LOC107776119
STRINGXP_009628855.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129131720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.19e-72