PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016451106.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 263aa    MW: 30570.2 Da    PI: 5.1955
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016451106.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.38e-29988181
             NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81
                    lppGfrFhPtdeel+++yL+ +++++++++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nra+ sg
  XP_016451106.1  9 LPPGFRFHPTDEELIMYYLRYQATSRPCPV-SIIPEVDLYKFDPWELPEKAEFGENEWYFFTPRDRKYPNGVRPNRAAVSG 88
                    79****************************.89***************99999***********************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-475132IPR003441NAC domain
PROSITE profilePS5100528.8879157IPR003441NAC domain
PfamPF023652.1E-1110105IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVGKISSDLP PGFRFHPTDE ELIMYYLRYQ ATSRPCPVSI IPEVDLYKFD PWELPEKAEF  60
GENEWYFFTP RDRKYPNGVR PNRAAVSGKP PKGVKTDWIM HEYRLNESRS QPNKQNGSMR  120
LDDWVLCRIY KKKNLGKTME MMKAEEEEES EAQIEITNND IEVGATTSGP QTSKLPRNCS  180
LSHLLELDYF GSIPQLLGDN SYHTSFDNDQ SYTLMNNVNT NVVHQMEKSQ LGEVSHQYNS  240
QNNNYNIFFN QQPVFVNPAF QFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-52813414170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016451106.10.0PREDICTED: NAC transcription factor 29-like isoform X2
SwissprotK4BWV21e-135NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLA0A1S3YFQ80.0A0A1S3YFQ8_TOBAC; NAC transcription factor 29-like isoform X2
STRINGXP_009606198.11e-173(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.18e-82NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]