PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016450868.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bZIP | ||||||||
Protein Properties | Length: 485aa MW: 53233.7 Da PI: 6.7256 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32 | 2.7e-10 | 197 | 238 | 5 | 46 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++Lk XP_016450868.1 197 KTLRRLAQNREAARKSRLRKKAYVQQLETSRLKLSQLEQELK 238 788*************************99888888887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.5E-8 | 189 | 240 | No hit | No description |
SMART | SM00338 | 2.5E-7 | 193 | 258 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.438 | 195 | 239 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 6.42E-22 | 197 | 248 | No hit | No description |
SuperFamily | SSF57959 | 1.56E-6 | 197 | 240 | No hit | No description |
Pfam | PF00170 | 7.6E-7 | 197 | 238 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 200 | 215 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.4E-30 | 282 | 355 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MQAFKAAVLP AVTLNNNNNS NMYCHSSFYL RGDEASRHAA ARFADIGELE QSTGFPQEDA 60 VDLSRIYGEM RPNNVAVVSS NNNLHFGELN TSIGSTEMGS SETGGVEAGG RFMLHKAQTT 120 MVGGGGVVGG GAVTLGNGHF ENWADSGIAD HSHSQQTDTS TDVDTDERNH QGQGVQHGAL 180 MAVDSIDQSK VKHGDQKTLR RLAQNREAAR KSRLRKKAYV QQLETSRLKL SQLEQELKRA 240 RQQGMFIANG YAGDQSLSGG GNGALAFDMD YARWLEDHQR LISDLRSAVN SHRGDNELRL 300 LVDGVMLHYD EIFKLKSVGA KSDVFHMLSG MWKTPAERCF MWLGGFRSSE LLKILGNHLE 360 PLTEQQLMGI CNLQQSSQQA EDALSQGMEA LQQSLVDTLS STSLGPTGSG NVADYMGQMA 420 IAMGKLATLE NFLYQADLLR QQTLQQLHRI LTTRQAARAL LVISDYMSRL RALSSLWLAR 480 PKDQL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-95 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016450868.1 | 0.0 | PREDICTED: transcription factor HBP-1b(c38)-like isoform X2 | ||||
Swissprot | Q41558 | 1e-177 | HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment) | ||||
TrEMBL | A0A1S3YFQ2 | 0.0 | A0A1S3YFQ2_TOBAC; transcription factor HBP-1b(C38)-like isoform X2 | ||||
STRING | XP_009799342.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68640.1 | 1e-136 | bZIP family protein |