PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016450737.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 328aa    MW: 36160.9 Da    PI: 10.0854
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016450737.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.61.2e-1636120186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  v +L+ea++ ++   +r+klk+++We+v+k++     +++  ++++qCk+k+e+++kry+ + +++ +      s++p++ +l+
  XP_016450737.1  36 EWSEGAVSCLLEAYEAKWILRNRAKLKGQDWEDVAKHVsargNSTKSPKTQTQCKNKIESMKKRYRSESATAADA-----SSWPLYPRLD 120
                     5*************************************54444445567788******************99984.....57****9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.8E-2034120No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDQEISNKDD FFPRNKQQNY HVATGNNTSD RLKRDEWSEG AVSCLLEAYE AKWILRNRAK  60
LKGQDWEDVA KHVSARGNST KSPKTQTQCK NKIESMKKRY RSESATAADA SSWPLYPRLD  120
LLLRGNNASA ASTSVIPPPP PAVVEPPQPV TVLPPPPPAP VPPPPPPPPP MAVPIGNGGQ  180
NSNGSNGVDR AAKEDTMDAK LSDNAAISDK NAMDTNSSTP ALYSDDKSKS KNVKVRSMEK  240
RSKNKRKRAE GWEIGESIRL LAEVVVRSEQ ARMETMREIE RMRAEAEAKR GEMDLKRTEI  300
IANTQLEIAK LFASIAKGVD PSLRIGRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239245KRSKNKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754402e-99HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778178.10.0PREDICTED: formin-binding protein 4
RefseqXP_016450737.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A1S3YFD00.0A0A1S3YFD0_TOBAC; trihelix transcription factor ASIL2-like
TrEMBLA0A1U7WHQ60.0A0A1U7WHQ6_NICSY; formin-binding protein 4
STRINGXP_009778178.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122511620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-56sequence-specific DNA binding transcription factors