PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016449737.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 179aa MW: 20881.2 Da PI: 10.6659 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.8 | 1.4e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n+s rqvtfskRrng+lKKA+EL +LCda+v +iifsstgklye+s+ XP_016449737.1 10 RIDNSSSRQVTFSKRRNGLLKKAKELAILCDAQVGLIIFSSTGKLYEFSN 59 8***********************************************95 PP | |||||||
2 | K-box | 76.7 | 6.3e-26 | 81 | 171 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++ + +q+e+a L++++++Lq+++R+++Ge+L L++k+Lq+Le++Le+s++ iR kK+++l+++i+el k +++en +L +k++ XP_016449737.1 81 NPVSELKLWQKEAAMLRQQLQELQQNHRQVMGEQLYGLTIKDLQHLENRLETSIRGIRMKKEQILHDEIQELSWKGSLMHQENLELVQKVK 171 45677899********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.3E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.441 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.27E-32 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.36E-42 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 2.8E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.2E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.5E-23 | 85 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.633 | 86 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MGRGKIVIRR IDNSSSRQVT FSKRRNGLLK KAKELAILCD AQVGLIIFSS TGKLYEFSNT 60 SMKSIVERYN KTKDERNQLH NPVSELKLWQ KEAAMLRQQL QELQQNHRQV MGEQLYGLTI 120 KDLQHLENRL ETSIRGIRMK KEQILHDEIQ ELSWKGSLMH QENLELVQKV KVNAKNKGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-20 | 1 | 80 | 1 | 76 | MEF2C |
5f28_B | 2e-20 | 1 | 80 | 1 | 76 | MEF2C |
5f28_C | 2e-20 | 1 | 80 | 1 | 76 | MEF2C |
5f28_D | 2e-20 | 1 | 80 | 1 | 76 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 2e-46 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016449737.1 | 1e-128 | PREDICTED: MADS-box transcription factor 27-like isoform X4 | ||||
Swissprot | Q6EP49 | 2e-86 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A1S3YCL0 | 1e-126 | A0A1S3YCL0_TOBAC; MADS-box transcription factor 27-like isoform X4 | ||||
STRING | XP_009764343.1 | 1e-120 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 2e-81 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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