PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016449248.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 496aa    MW: 54775.6 Da    PI: 6.2483
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016449248.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-14310355454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+++P+      +K++Ka+ L  AveYI++L
  XP_016449248.1 310 NHVEAERQRREKLNHRFYALRSVVPHV-----TKMDKASLLSDAVEYINEL 355
                     799***********************8.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-5431208IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.66E-18298367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.301306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.62E-15309359No hitNo description
Gene3DG3DSA:4.10.280.104.0E-17310371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11310355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-17312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MDELMVSSSS SSSSFSIPSL FSQTNQPLST LQQMLQHVLK NQTDSWSYAI FWQTSNDDDG  60
RLFLAWGDGH FHGTKVKKGE VNGANKASSL ERKNVIKGIQ ALICENGDGV VEDGGDVTDI  120
EWFYVMSLAQ SFSIGDGIPG KAFCTGSFVW LNGAQQLQFC SCERAKEAQV HGIETLVCIP  180
TSNGVLELGS SDLIKENWSL VQQVKSLFSL DQENGLEKTV SFANIGLVSC LQENGQILAI  240
NNNNHNKNNT SKKPKTEEIS TTATAATTLF QDSDHSDSDC QVLVDKPIVE KKTPKKRGRK  300
PGATRETPLN HVEAERQRRE KLNHRFYALR SVVPHVTKMD KASLLSDAVE YINELKTKVD  360
ELELQLNKKS ESKKKLKVES MDSTTLDNQT TTTTTTSVDQ IRPNSNSSSS YGPNNLTVEV  420
EVKILGPDAM IRVQSENVNY PSARLMRALQ DLELHVHHAS ISSVNDLMLQ DIVVKVPKCL  480
GTENGLKSAL LRSLEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-42302118195Transcription factor MYC3
4rqw_B1e-42302118195Transcription factor MYC3
4rs9_A1e-42302118195Transcription factor MYC3
4yz6_A1e-42302118195Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8591540.0GQ859154.1 Nicotiana benthamiana bHLH3 transcription factor-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776117.10.0PREDICTED: transcription factor MYC2-like
RefseqXP_016449248.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1S3YB590.0A0A1S3YB59_TOBAC; transcription factor MYC2-like
TrEMBLA0A1U7W7Y90.0A0A1U7W7Y9_NICSY; transcription factor MYC2-like
STRINGXP_009776117.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.19e-68bHLH family protein