PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448453.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Nin-like
Protein Properties Length: 265aa    MW: 31373.5 Da    PI: 6.182
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448453.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.71.7e-26154203352
          RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     ++++l+++++yF+ pi++AAkeL v+lTvLK++CR+++I+RWPhRkiksl
  XP_016448453.1 154 DTLELDEIQRYFHVPINKAAKELRVGLTVLKKRCRELNIMRWPHRKIKSL 203
                     7899********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.666137225IPR003035RWP-RK domain
PfamPF020429.2E-24155203IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDSHVLTLEN QNDQFDWLYS EHAPPPFGTW QQQDSRILSN GGLFNFEYFD PFQFPNDLQN  60
NNLPFFELKE LEEICQDLGT LDVRLPPFQE DIPQNMTFSP LEECQNVTSA RNEVHMQDKN  120
YYDYTVGEIE FSSGTNNKEL IRKRNNNGRH KKSDTLELDE IQRYFHVPIN KAAKELRVGL  180
TVLKKRCREL NIMRWPHRKI KSLQTLIDSV KEMGLTSEVE MLEEHQRMLE KVPEMELTER  240
TKKLRQTCFK ANYKKRRAGM AAFSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754422e-53HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016448453.10.0PREDICTED: protein RKD2-like
TrEMBLA0A1S3Y9100.0A0A1S3Y910_TOBAC; protein RKD2-like
STRINGXP_009589276.11e-162(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA121431922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.12e-41RWP-RK domain-containing protein