PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016448397.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 442aa MW: 48467.5 Da PI: 6.9784

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016448397.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.6	7e-09	50	79	1	31
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 r +WT+eE++++ +a k++G+ W+ I +++ XP_016448397.1 50 REKWTEEEHKKFFEALKLYGSA-WRQIEEHV 79 789*****************.**9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.97E-8	38	81	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-5	47	79	IPR009057	Homeodomain-like
Pfam	PF00249	5.5E-7	50	79	IPR001005	SANT/Myb domain
CDD	cd00167	1.83E-4	52	86	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
DQTKGVGQDA SSVISSKLGT VATQVKVETF PGNENMPKQV RKPYTFTKHR EKWTEEEHKK 60 FFEALKLYGS AWRQIEEHVA HDSGNDGDGS LNVMDIPPPR PKKKPLHPYP RKMVDSPITN 120 LGSSAQSERS PTPSASPQGR DTYSPDSVLC DSDLSGSPVA AQRSANLSPA SCKMDAHSDY 180 LISTENDAKY MTSKSSIEEE VPVASKVEAD SCWTSYQFQN GKFTIQASYR YQAVETPLAG 240 IKLFGQTVFV PDAPHLGSQG TENCNSLPSN ATEEKINIGN DNLFHSFPFN QANAQFILAM 300 VPGSTIPPAS XLPENWLDDN PNNLASLPAT MSWRSWYQGL VHRFVSPCSQ TATGSSVPSQ 360 RQNSKESQRE GSSSGSNIGS ASEADYGKRN CYAVESKCTS RSEKRNYIKG FVPYKRCLAE 420 RDGMSSGVGA EEREVQRARM CS

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

DQTKGVGQDA SSVISSKLGT VATQVKVETF PGNENMPKQV RKPYTFTKHR EKWTEEEHKK  60
FFEALKLYGS AWRQIEEHVA HDSGNDGDGS LNVMDIPPPR PKKKPLHPYP RKMVDSPITN  120
LGSSAQSERS PTPSASPQGR DTYSPDSVLC DSDLSGSPVA AQRSANLSPA SCKMDAHSDY  180
LISTENDAKY MTSKSSIEEE VPVASKVEAD SCWTSYQFQN GKFTIQASYR YQAVETPLAG  240
IKLFGQTVFV PDAPHLGSQG TENCNSLPSN ATEEKINIGN DNLFHSFPFN QANAQFILAM  300
VPGSTIPPAS XLPENWLDDN PNNLASLPAT MSWRSWYQGL VHRFVSPCSQ TATGSSVPSQ  360
RQNSKESQRE GSSSGSNIGS ASEADYGKRN CYAVESKCTS RSEKRNYIKG FVPYKRCLAE  420
RDGMSSGVGA EEREVQRARM CS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016448397.1	0.0	PREDICTED: LOW QUALITY PROTEIN: protein CCA1-like, partial
TrEMBL	A0A1S3Y8L8	0.0	A0A1S3Y8L8_TOBAC; LOW QUALITY PROTEIN: protein CCA1-like
STRING	XP_009768903.1	1e-139	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7447	21	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	8e-20	MYB_related family protein