PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016448153.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 173aa MW: 20038.5 Da PI: 10.0618 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.6 | 1.4e-12 | 22 | 50 | 14 | 42 |
HHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifss 42 kR ++K A+ELS+LC++++a+i+fs+ XP_016448153.1 22 LKRTRSLFKQAKELSILCAIQIAIIVFSP 50 69**************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 4.45E-13 | 1 | 78 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.8E-5 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.003 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-10 | 14 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MAGKKHKNSS KMSESEKKAL ILKRTRSLFK QAKELSILCA IQIAIIVFSP WETSPIYWPS 60 EAQATEIFKN YLKKPEVVRM KKLIKLETYL SEKEKAKEED IRKMEQKNDE MEMEFLFCEL 120 IKGKSMNELD VRQTKGLLKL AALKKAKLEE MKKQLAEQND QPKQGNDNAA GAW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009615159.2 | 1e-122 | PREDICTED: agamous-like MADS-box protein AGL90 | ||||
Refseq | XP_016448153.1 | 1e-122 | PREDICTED: agamous-like MADS-box protein AGL90 | ||||
TrEMBL | A0A1S3Y7K0 | 1e-120 | A0A1S3Y7K0_TOBAC; agamous-like MADS-box protein AGL90 | ||||
STRING | XP_009615159.1 | 1e-112 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26650.1 | 7e-16 | AGAMOUS-like 36 |