PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016446596.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 824aa MW: 93888.2 Da PI: 7.6357

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016446596.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.8	1.6e-22	80	162	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA+ +GF +++++s++sk++g++++ + Cs+ g ++e+ + r+ +t+Cka+++vk+++dgkw+++++++eHnHe++ XP_016446596.1 80 SFYKEYARLLGFGITIKASRRSKKSGKFIDVKIACSRFGAKRESGSF-------RSCPKTDCKASVHVKRRQDGKWYIYSFVKEHNHEIC 162 5**************************************999888.......9999****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-20	80	162	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.0E-27	245	338	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.014	525	561	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-7	536	563	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.4E-6	538	558	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 824 aa Download sequence Send to blast
MEIDLELPSG VDTLDVYMGK NAIDDSSQNH AGVEYVKENV DESGDAIGMD VLDVDIIDKG 60 IANNEPQKDM EFETKEAAYS FYKEYARLLG FGITIKASRR SKKSGKFIDV KIACSRFGAK 120 RESGSFRSCP KTDCKASVHV KRRQDGKWYI YSFVKEHNHE ICSDDFYCSV RGRSKQSANV 180 VYQKKGLQLA LNEGDVEVLL DTLALMQAES PNSYYAIDFD KEKRMRNVFW VDAKCRNDYG 240 HFCDVIYLDT YYIRNKYKVP FIPIVGVNHH FQFLLLGCAL VGDETSSTFA WLLRTWLRAV 300 GGQSPRVVIT DDDTSVKEAV EQVFPEARHC FCLSHVMEKV SQDLGNKISK IEDFVNKLKK 360 CMWLPLKEEE FERRWWEMVD TFKLRDDDLI RSLFENRTKW VPVYMRNTFL AALSTVERSE 420 SVSSSFERYI SSDTTFKEFN DGYKLFVHDK YEEEAKTDIE TRHRPPTIKT LSPYEKQMST 480 VYTNSLFMKF QAEVVGVAAC TVLNDGEEGT EKLYRVKDRD KNQSFMVSWR GRESYIVCSC 540 RSFEYIGILC RHAITVLQVN GVPNIPLVYI LKRWTREAKI KGRACRISST SCYRIQRLND 600 LCKLSAKFGE VGSLSQETYE SAVFAIQAAM QDCINVNNSV KSALVSNISS SQCNPNIDEE 660 IQGGSMAKSS KRKKVQKKRK VQYNGEVLST RIQDNSLQMD QSNSKMPTNE DAFLAQRHVQ 720 GMDPGSRVAT IDGHYAHHSI HGLGQLSSFS MLRDNYYSNH QASHRVLGNL NYISAHGGHY 780 SPHSFQGLGQ LSFKAPLLHT SFDIQGNSSD MDNPTSVTGK HLQD

Sequence ? help Back to Top

Protein Sequence Length: 824 aa Download sequence Send to blast

MEIDLELPSG VDTLDVYMGK NAIDDSSQNH AGVEYVKENV DESGDAIGMD VLDVDIIDKG  60
IANNEPQKDM EFETKEAAYS FYKEYARLLG FGITIKASRR SKKSGKFIDV KIACSRFGAK  120
RESGSFRSCP KTDCKASVHV KRRQDGKWYI YSFVKEHNHE ICSDDFYCSV RGRSKQSANV  180
VYQKKGLQLA LNEGDVEVLL DTLALMQAES PNSYYAIDFD KEKRMRNVFW VDAKCRNDYG  240
HFCDVIYLDT YYIRNKYKVP FIPIVGVNHH FQFLLLGCAL VGDETSSTFA WLLRTWLRAV  300
GGQSPRVVIT DDDTSVKEAV EQVFPEARHC FCLSHVMEKV SQDLGNKISK IEDFVNKLKK  360
CMWLPLKEEE FERRWWEMVD TFKLRDDDLI RSLFENRTKW VPVYMRNTFL AALSTVERSE  420
SVSSSFERYI SSDTTFKEFN DGYKLFVHDK YEEEAKTDIE TRHRPPTIKT LSPYEKQMST  480
VYTNSLFMKF QAEVVGVAAC TVLNDGEEGT EKLYRVKDRD KNQSFMVSWR GRESYIVCSC  540
RSFEYIGILC RHAITVLQVN GVPNIPLVYI LKRWTREAKI KGRACRISST SCYRIQRLND  600
LCKLSAKFGE VGSLSQETYE SAVFAIQAAM QDCINVNNSV KSALVSNISS SQCNPNIDEE  660
IQGGSMAKSS KRKKVQKKRK VQYNGEVLST RIQDNSLQMD QSNSKMPTNE DAFLAQRHVQ  720
GMDPGSRVAT IDGHYAHHSI HGLGQLSSFS MLRDNYYSNH QASHRVLGNL NYISAHGGHY  780
SPHSFQGLGQ LSFKAPLLHT SFDIQGNSSD MDNPTSVTGK HLQD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016446596.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like isoform X2
TrEMBL	A0A1S3Y392	0.0	A0A1S3Y392_TOBAC; protein FAR1-RELATED SEQUENCE 2-like isoform X2
STRING	XP_009768386.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	0.0	FAR1-related sequence 2