PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016446189.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 159aa MW: 18531.7 Da PI: 9.7464 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.8 | 2.8e-13 | 22 | 50 | 14 | 42 |
HHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifss 42 kR + ++K AeELSvLC++++a+iifs+ XP_016446189.1 22 LKRTTSLFKQAEELSVLCAIQIAIIIFSP 50 69**************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 11.297 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-6 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.19E-13 | 13 | 93 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-10 | 14 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 159 aa Download sequence Send to blast |
MASKKHKNSS EMSESEKKSL ILKRTTSLFK QAEELSVLCA IQIAIIIFSP WETSPIYWPS 60 EAQATEIFKN YLKKPEVVRT KKLIKLETYL SEKEKAKEED IRKMEQKNEE MEMEFLFSEL 120 VKGKSMNELD VRQTKGLLKL AALKKAKLEE MKKQLAEQN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009771864.1 | 1e-108 | PREDICTED: agamous-like MADS-box protein AGL90 | ||||
Refseq | XP_016446189.1 | 1e-108 | PREDICTED: agamous-like MADS-box protein AGL90 | ||||
TrEMBL | A0A1S3Y227 | 1e-107 | A0A1S3Y227_TOBAC; agamous-like MADS-box protein AGL90 | ||||
TrEMBL | A0A1U7WB26 | 1e-107 | A0A1U7WB26_NICSY; agamous-like MADS-box protein AGL90 | ||||
STRING | XP_009771864.1 | 1e-108 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26650.1 | 4e-15 | AGAMOUS-like 36 |