PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016445883.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 153aa MW: 17336.8 Da PI: 4.7206

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016445883.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	33.9	9.1e-11	1	37	61	97
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelall 97 +vyeA ar+rdPvyG+vg+i++lq+++ +l++el+++ XP_016445883.1 1 MVYEATARLRDPVYGCVGIISALQKHVFHLQSELNEA 37 69*******************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.306	1	41	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-9	1	36	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MVYEATARLR DPVYGCVGII SALQKHVFHL QSELNEALAE VMSLRTQVSD ALSLPSLLEG 60 SPFTPENHEF LHFQKPSEQN AYANASDALL LLPEAADHYC LQETEVLHPL PYLDILFSSM 120 DNNRLSIFAF HSTPWDLVKA MFQSCRYTSF FLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	7e-64	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016445883.1	1e-110	PREDICTED: LOB domain-containing protein 3-like
TrEMBL	A0A1S3Y0Z4	1e-109	A0A1S3Y0Z4_TOBAC; LOB domain-containing protein 3-like
STRING	XP_009631247.1	1e-109	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13147	14	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	7e-13	LOB domain-containing protein 13