PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016445413.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 317aa    MW: 35132.4 Da    PI: 9.4999
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016445413.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.12.5e-32185241158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh hA++R RgsgGrF
  XP_016445413.1 185 DGPIYVNAKQYHGILRRRQIRAKLEAQNKL-VKARKPYLHESRHLHAVKRVRGSGGRF 241
                     57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.2E-36183244IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.507184244IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.0E-24187209IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.2E-27187241IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860189209IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.0E-24218241IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAIRAQALPN RSLEQTPTCF VPHFAVNNST WWSSNEVQSS QSLSKNLTSE VVFLPPPCQQ  60
MKFLGLELQG DDSHSTQSNS NPPLEVTALG KTGSQDQCTS SGSVHDENYK RHKQAQIKPI  120
SFIRNPEYTT DCSQSEMAHS ISHAPFGYSD PYLSGLYAAY GPHVFPQMMG IAPARLPLPL  180
DLAEDGPIYV NAKQYHGILR RRQIRAKLEA QNKLVKARKP YLHESRHLHA VKRVRGSGGR  240
FLSTKKVQES IPNDHINSSS SLDLVTREAH TSAFLSVRQD AAHNGVIFQQ QQHDHRASSL  300
SSHLAVSMQS SRSTGIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-21187245462NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016445413.10.0PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2
TrEMBLA0A1S3XZP60.0A0A1S3XZP6_TOBAC; nuclear transcription factor Y subunit A-7-like isoform X2
STRINGXP_009631340.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.11e-38nuclear factor Y, subunit A5