PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016444448.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 335aa MW: 37339.4 Da PI: 5.995

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016444448.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	3.9e-10	58	107	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL + l ++ +K++Ka+iL +v+ +k+L XP_016444448.1 58 RKVQKADREKLRRDRLNEQFMELGKTLDPD----RPKNDKASILSDTVQMLKDL 107 5677889******************997....79**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	8.5E-12	57	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.28E-13	57	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.44	57	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.36E-7	58	112	No hit	No description
Pfam	PF00010	5.1E-8	58	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-7	63	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MDQLNNGAMY QSNYLSNHCL AELNQLPSDV AIPPNGFHSE SSTKQQPEAE LKDSLAARKV 60 QKADREKLRR DRLNEQFMEL GKTLDPDRPK NDKASILSDT VQMLKDLTAQ VSRLKSEYAA 120 LTDESRELTQ EKNDLREEKA SLKSDIESLN AQYQQRVRTM YPWAGMDHSM VMHPPSYSYP 180 MPVPVPAGPV PMHPSLQPYP FFSNQNPAVV PNPCSSFLQY MTPNTLIEQQ SAQYMSPIIQ 240 PGSMTRQDSR NKSSDQGESR IDKSEDSNEV ATDLELKTPG SASDQDLSSG QRKSKRMSKK 300 DNSLTDGSSS SRCSSSHSVQ AISSNSVVRG TKTDD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240854	1e-178	AC240854.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-25n22 map 1, complete sequence.
GenBank	AC240859	1e-178	AC240859.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-138h16 map 1, complete sequence.
GenBank	HG975513	1e-178	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009610672.1	0.0	PREDICTED: transcription factor bHLH121-like
Refseq	XP_016444448.1	0.0	PREDICTED: transcription factor bHLH121-like
Swissprot	Q9LT23	2e-92	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A1S3XWY3	0.0	A0A1S3XWY3_TOBAC; transcription factor bHLH121-like
STRING	XP_009610672.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5456	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	4e-86	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]