PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016443892.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 195aa MW: 22302.5 Da PI: 7.4513

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016443892.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.6	4.6e-08	89	118	2	31
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 2 rrahnerErrRRdriNsafeeLrellPkas 31 r +h +Er+RR+++ ++ Lr+llP ++ XP_016443892.1 89 RIMHRDIERQRRREMSALYSSLRSLLPLQY 118 789************************953 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.22E-4	86	116	No hit	No description
SuperFamily	SSF47459	6.98E-6	88	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-5	89	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-4	89	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MYSLQESDEL MFQIFSNPCQ QSKISQDLVM DYASLETRTH DPLNYINNNS QVNKRLPKRI 60 LGTTDNNIPD KKDETAAAAA TPDDFKLTRI MHRDIERQRR REMSALYSSL RSLLPLQYVK 120 GGIEILISVD CKAQSFPLSR VLRELLKQGI NVVSCVSAKV NQRSLHTIQI EVCDMNNIDH 180 QALQQKVIDL INVDL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016443892.1	1e-142	PREDICTED: transcription factor bHLH120-like isoform X2
TrEMBL	A0A1S3XW06	1e-141	A0A1S3XW06_TOBAC; transcription factor bHLH120-like isoform X2
STRING	XP_009624565.1	1e-105	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	4e-12	bHLH family protein