PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016443325.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 223aa MW: 25959.6 Da PI: 9.3469

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016443325.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	81.2	6.9e-26	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien rqvtfskR+ g++KKA+EL +LCdaev+v ifsstg+lyeyss XP_016443325.1 10 RIENPASRQVTFSKRKSGLIKKAKELAILCDAEVLVTIFSSTGRLYEYSS 59 8***********************************************96 PP
2	K-box	72	1.8e-24	80	169	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++a +q+e+++L+++++ Lq++ R+l+Ge+L+ + + +L Le+qLe lk+iR+kK+++l+++ieel +k +++en +L+kk+ XP_016443325.1 80 TPSSEARLWQTEAERLRQQMDHLQENYRRLKGEELSGMRISDLDALENQLEMRLKNIRTKKEKMLTDEIEELNQKRALIHHENIELSKKI 169 45778899********************************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	30.053	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.7E-35	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.53E-37	2	77	No hit	No description
PRINTS	PR00404	2.9E-26	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-30	3	83	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.4E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-26	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	5.3E-22	83	169	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	13.268	85	175	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MARGKIAIRR IENPASRQVT FSKRKSGLIK KAKELAILCD AEVLVTIFSS TGRLYEYSSS 60 SMKSIFDRYN EEKEHHQLLT PSSEARLWQT EAERLRQQMD HLQENYRRLK GEELSGMRIS 120 DLDALENQLE MRLKNIRTKK EKMLTDEIEE LNQKRALIHH ENIELSKKIT LVQHENRQLL 180 KKGYGAIDIR KEEGSFSGQA NSCVPVHVNR SEEDEIRLGL QLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-20	1	82	1	82	MEF2C
5f28_B	1e-20	1	82	1	82	MEF2C
5f28_C	1e-20	1	82	1	82	MEF2C
5f28_D	1e-20	1	82	1	82	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009757374.1	1e-163	PREDICTED: MADS-box transcription factor 23-like isoform X1
Refseq	XP_009757375.1	1e-163	PREDICTED: MADS-box transcription factor 23-like isoform X1
Refseq	XP_009757376.1	1e-163	PREDICTED: MADS-box transcription factor 23-like isoform X1
Refseq	XP_016443325.1	1e-163	PREDICTED: MADS-box transcription factor 23-like isoform X1
Refseq	XP_016443326.1	1e-163	PREDICTED: MADS-box transcription factor 23-like isoform X1
Swissprot	Q6EP49	5e-78	MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBL	A0A1S3XTX9	1e-161	A0A1S3XTX9_TOBAC; MADS-box transcription factor 23-like isoform X1
TrEMBL	A0A1U7V6M3	1e-161	A0A1U7V6M3_NICSY; MADS-box transcription factor 23-like isoform X1
STRING	XP_009757374.1	1e-162	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA679	20	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	7e-78	AGAMOUS-like 21

Publications ? help Back to Top
Puig J, et al. Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice. Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70 [PMID:23466806] Yu C, et al. The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice. PLoS ONE, 2014. 9(8): p. e105597 [PMID:25140876]