PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016443112.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 706aa MW: 79227.9 Da PI: 5.4694 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 65.1 | 1.1e-20 | 572 | 668 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 +kvl++sdv+++gr+vlpkk ae+h +++++ ++ + +ed ++r+W++k+++ ++ks++y+l+ ++ +Fv+ ngL+egDf+v++ d ++++ XP_016443112.1 572 QKVLKQSDVGNLGRIVLPKKEAESHlpELESRDGISIAMEDiGTSRVWNMKYRFwpNNKSRMYLLE-NTGDFVRTNGLQEGDFIVLYADT-KCGK 664 79*************************999999********7778*******99777777777777.********************544.8888 PP .EEE CS B3 92 lvvk 95 ++++ XP_016443112.1 665 YLIR 668 7776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-28 | 563 | 676 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 1.51E-34 | 569 | 670 | No hit | No description |
SuperFamily | SSF101936 | 7.26E-23 | 570 | 665 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.2E-20 | 571 | 673 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.701 | 571 | 673 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.5E-17 | 572 | 667 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 706 aa Download sequence Send to blast |
MKRGLEYHGK QDLEDGLENV MVAIDDIQSH QQTTEFVPME EEHVLGSIVG DTEIFLDGDG 60 SHSHHHHHLD VNDTSIFSTD FLPLPDFPCM SSSSSTSSAP TALSKPFPTS SSSSSASSSN 120 SASWAVLKSD AEEDVHKNIQ PPALSSTTSM ELSLPPPEDD VDCLNVMEDL GYMDLIDGNE 180 FWDPCTLFQS DNQNPQDYNM SDQSFQLSQD HQQNQESKPQ LEEEGDDDQN DGLSFFTGNS 240 ELAVIFFEWL KQNKDYISAE DMRSIKLKRS TIESASKRLG GSKEGKKQLL RLILEWVEQY 300 QLQKKAAATA ASDSPCQYQE SQLHDSSPNP NSNFQYNNAV ASDPNACFYP SPWMPTPSPY 360 IPGPDPFYPT PMAPGYAGDP YSNVPSFTNM EYQTMESAQS WPPSQFSAMA ASQYTPFPEN 420 ESNLATQANP QGLFSQYPYQ LYDGNGERLA RLGSSATKEA RKKRMARQRR LPSHHYRHHS 480 HQTQHQSQSS DQSLRIVGEN CTMSPANNPG NWVYWPSAAS SPMMMVPPPE APQPHPMTER 540 PGMQPQNHQK HASADKRSQN WKSEKNLKFL LQKVLKQSDV GNLGRIVLPK KEAESHLPEL 600 ESRDGISIAM EDIGTSRVWN MKYRFWPNNK SRMYLLENTG DFVRTNGLQE GDFIVLYADT 660 KCGKYLIRGV KVRQTGPKAE GKKPAKKNMV LSHAKASIWW TCFRGV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 4e-36 | 567 | 671 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 4e-36 | 567 | 671 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Participates in abscisic acid-regulated gene expression during seed development. Regulates the transcription of SGR1 and SGR2 that are involved in leaf and embryo degreening. {ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:24043799}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. {ECO:0000269|PubMed:19783648}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY911399 | 2e-86 | AY911399.1 Lycopersicon esculentum ABI3 (ABI3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009792996.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor ABI3-like | ||||
Refseq | XP_016443112.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor ABI3-like isoform X1 | ||||
Swissprot | Q01593 | 1e-152 | ABI3_ARATH; B3 domain-containing transcription factor ABI3 | ||||
TrEMBL | A0A1S3XTU5 | 0.0 | A0A1S3XTU5_TOBAC; B3 domain-containing transcription factor ABI3-like isoform X1 | ||||
TrEMBL | A0A1U7XTP2 | 0.0 | A0A1U7XTP2_NICSY; B3 domain-containing transcription factor ABI3-like | ||||
STRING | XP_009792996.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4270 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 1e-133 | B3 family protein |