PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016442774.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 186aa MW: 21801.2 Da PI: 10.5033 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.4 | 8.2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr+g+lKKA+ELS+LCdaeva++ifs++gk y ++s XP_016442774.1 9 KRIENQTSRQVTFSKRRTGLLKKAFELSILCDAEVALLIFSPSGKAYQFAS 59 79**********************************************986 PP | |||||||
2 | K-box | 66.3 | 1.1e-22 | 89 | 170 | 17 | 98 |
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + e++ + + i++L+ +h+ GedL++L +keL+qLe+qL ++++iRskK +++ eqi+ l+++ k l+een L+k++ XP_016442774.1 89 RRSEIEDMTRTIDELEARDKHFAGEDLSTLGMKELKQLERQLRIGVERIRSKKRRIISEQINWLKRRHKILHEENIHLQKQV 170 56899************9*************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.66 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.56E-39 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 2.49E-31 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.891 | 86 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 4.9E-22 | 89 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MGRGKVELKR IENQTSRQVT FSKRRTGLLK KAFELSILCD AEVALLIFSP SGKAYQFASP 60 DIDRTILRYK NEVGLSKTID QGFRAMEVRR SEIEDMTRTI DELEARDKHF AGEDLSTLGM 120 KELKQLERQL RIGVERIRSK KRRIISEQIN WLKRRHKILH EENIHLQKQV RLHELREGEG 180 SSIFLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 5e-24 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 5e-24 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 5e-24 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 5e-24 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF270624 | 1e-164 | KF270624.1 Solanum lycopersicum cultivar Florida Petite TM8-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016442773.1 | 1e-132 | PREDICTED: MADS-box protein SOC1-like | ||||
Refseq | XP_016442774.1 | 1e-132 | PREDICTED: MADS-box protein SOC1-like | ||||
Refseq | XP_018624284.1 | 1e-132 | PREDICTED: MADS-box protein SOC1-like isoform X1 | ||||
Refseq | XP_018624285.1 | 1e-132 | PREDICTED: MADS-box protein SOC1-like isoform X1 | ||||
TrEMBL | A0A1S3XS51 | 1e-131 | A0A1S3XS51_TOBAC; MADS-box protein SOC1-like | ||||
STRING | PGSC0003DMT400039313 | 1e-105 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 3e-44 | AGAMOUS-like 20 |