PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016442143.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 302aa MW: 34649.3 Da PI: 4.5379

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016442143.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.2e-18	81	134	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q++ Le+ Fe ++++ e++ +LA++lgL+ rq+ +WFqNrRa++k XP_016442143.1 81 KKRRLLPNQVQFLEKSFEVDNKLEPERKVQLAQELGLQPRQIAIWFQNRRARYK 134 45578899*********************************************9 PP
2	HD-ZIP_I/II	124.1	6.4e-40	80	171	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl +qv++LE+sFe ++kLeperKv+la+eLglqprq+a+WFqnrRAR+ktk lEkdy++Lk+++d+lk++ ++L ke+e+Lr+e++ XP_016442143.1 80 EKKRRLLPNQVQFLEKSFEVDNKLEPERKVQLAQELGLQPRQIAIWFQNRRARYKTKLLEKDYDVLKASFDKLKDDYDSLFKENENLRNEVD 171 69**************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.01E-18	68	135	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.184	76	136	IPR001356	Homeobox domain
SMART	SM00389	4.6E-18	79	140	IPR001356	Homeobox domain
CDD	cd00086	7.51E-17	81	136	No hit	No description
Pfam	PF00046	1.9E-15	81	134	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.2E-18	84	143	IPR009057	Homeodomain-like
PRINTS	PR00031	5.6E-6	107	116	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	111	134	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.6E-6	116	132	IPR000047	Helix-turn-helix motif
Pfam	PF02183	4.1E-15	137	177	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MEVGRVKEGS NMSTANSVLP SEVLHNLWMS NSSPSFHGPT SMVNFEDGRG EISKEMSFFS 60 PIDKEETSTD DYDSCFHRPE KKRRLLPNQV QFLEKSFEVD NKLEPERKVQ LAQELGLQPR 120 QIAIWFQNRR ARYKTKLLEK DYDVLKASFD KLKDDYDSLF KENENLRNEV DLLKEKMLRR 180 EKGKENSGQN EPISPVDAEE AQKATPNVVT SEVPSIQKVV CKQEDASSAK SDVIDSDSPH 240 YTDGNHSSNA FEAEPSDFSQ DEDDNLSKSF LCFPEIGDQI QANSCNLGFQ IEDHQPCWFW 300 QY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	1e-118	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009610614.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT5-like
Refseq	XP_016442143.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBL	A0A1S3XQB0	0.0	A0A1S3XQB0_TOBAC; homeobox-leucine zipper protein HAT5-like
STRING	XP_009610614.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA825	24	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-46	homeobox 1