PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016441775.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 303aa MW: 33151.8 Da PI: 9.7719 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.9 | 2.8e-14 | 112 | 156 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky XP_016441775.1 112 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 156 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.67 | 105 | 161 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.13E-17 | 107 | 161 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.3E-17 | 108 | 159 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.8E-10 | 109 | 159 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-11 | 111 | 156 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-11 | 112 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.72E-9 | 112 | 157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MMSRSSSQSG TNGHNSFTSA GESSPDAAYG GGGEIMLFGV RVKVDPMRKS VSLNNLSQYE 60 LPNGYANENI NNNTNGGNNN ESSKVADEGY ASADDAVPHH SGSGRERKRG VPWTEEEHKL 120 FLLGLQKVGK GDWRGISRNF VKTRTPTQVA SHAQKYFLRR TNLNRRRRRS SLFDITTDSV 180 SVMPMEEKKN LQEHQVLAPT PLPPVENSKI NAFQVTPLPV TYDQGDQVSK SSSIFHRPIP 240 VLPLANLSRI ADLNLNQSSA MEASSLSLTL SLSLDQSQSS STRHSAFQVM SNFNNGESII 300 SVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016441775.1 | 0.0 | PREDICTED: transcription factor MYB1R1-like | ||||
Swissprot | Q2V9B0 | 1e-101 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A0A1S3XP97 | 0.0 | A0A1S3XP97_TOBAC; transcription factor MYB1R1-like | ||||
STRING | XP_009599323.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2574 | 23 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19000.2 | 1e-57 | MYB_related family protein |
Publications ? help Back to Top | |||
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