PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016441621.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 256aa    MW: 28534.1 Da    PI: 8.5914
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016441621.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.6e-18105159256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq  +Le+ F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  XP_016441621.1 105 RKKLRLTKEQSAVLEDSFKEHSTLNSKQKRNLATRLSLRPRQVEVWFQNRRARTK 159
                     788899***********************************************98 PP
2HD-ZIP_I/II119.61.7e-38105194191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+keq+++LE+sF+e+++L++++K +la++L l+prqv+vWFqnrRARtk+kq+E+d+e L+++y+ lk en+rL+ke +eL+ +l
  XP_016441621.1 105 RKKLRLTKEQSAVLEDSFKEHSTLNSKQKRNLATRLSLRPRQVEVWFQNRRARTKLKQTEVDCEILRKCYEDLKGENRRLNKELQELK-SL 194
                     69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-1793155IPR009057Homeodomain-like
PROSITE profilePS5007116.86101161IPR001356Homeobox domain
SMARTSM003892.2E-15103165IPR001356Homeobox domain
SuperFamilySSF466891.28E-17103170IPR009057Homeodomain-like
PfamPF000462.0E-15105159IPR001356Homeobox domain
CDDcd000868.42E-14105162No hitNo description
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
PfamPF021833.9E-10161194IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.6E-16161204IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MICNTRLSLS LLGSSGESTT PKRKSNHQEL DINPFPSLTL CLSSSAVNSS VISAAVSSFS  60
NSSIKRERDA SFEEEVELDT NKVIISPKLD DVDQEQDEDH EFGTRKKLRL TKEQSAVLED  120
SFKEHSTLNS KQKRNLATRL SLRPRQVEVW FQNRRARTKL KQTEVDCEIL RKCYEDLKGE  180
NRRLNKELQE LKSLKMAAPF RVQLSAATLS MCPSCERTYG GGGGGDNSAT KISFSLGDQK  240
PNFYGSFANS SAALLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103109TRKKLRL
2153161RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016441621.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466045e-62HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A1S3XNW00.0A0A1S3XNW0_TOBAC; homeobox-leucine zipper protein HAT22-like
STRINGXP_009783420.11e-149(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-60HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]