PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016441082.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 810aa    MW: 90861.8 Da    PI: 9.6122
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016441082.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34.1e-06122142526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      Cr+f + G C++G+ C+F H+
  XP_016441082.1 122 VCRNFTA-GNCRRGSDCRFFHP 142
                     6******.***********998 PP
2zf-CCCH19.51.7e-06204227226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +t +Cr+f + G C+ G++C+F+H+
  XP_016441082.1 204 GTIICRDFVK-GNCRWGASCRFSHD 227
                     5779******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.15117144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-5118142IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-5119143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5120141IPR000571Zinc finger, CCCH-type
PfamPF146080.29123142No hitNo description
SuperFamilySSF902293.79E-5202227IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.713202229IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-5202228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-6205227IPR000571Zinc finger, CCCH-type
PfamPF146080.49207226No hitNo description
PROSITE profilePS5010312.061253279IPR000571Zinc finger, CCCH-type
SMARTSM003560.59253278IPR000571Zinc finger, CCCH-type
PfamPF146080.012259276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MSPAFDRWGR RSNSHSPNNG RTQSRRYPGR SRSRSRSRSR SRSRSRSRSR ARGEGRSRSR  60
SRGRDRFRGW TRSRSRSKSR DRDRDRGSMR VQNRSRSPLH NSKRDPYASG DRRSGPRMSS  120
QVCRNFTAGN CRRGSDCRFF HPDAINHRDG GHSEGNLAER LGSRPERGHV SRYADSEGPG  180
YQSRDRLPDM HHLEDEMHRN WNRGTIICRD FVKGNCRWGA SCRFSHDGAS GDSYDKGTRS  240
ASFDHGQDNQ ASRSGKSLCK YFAAGKCYKD NCKFSHDATS RNHEIRPSDD IGGHRLDDKN  300
NWLKGPKWDD EGRPSDLVKA SGWDEGRPSD HVKSSGWDES VVRKDTAVTV LTDRTNERLD  360
HSFENESRAW GSTEPHYMNS DRERGVSPHG GNAGNLNDLN ISESSVMQKL TNAQAIHLTS  420
QASDQNMERT SAHVLGHNSN PEASGIILSA TDNQPYGSAS SYIQPQGLTE DSIARTLGSN  480
ALNEFMHARD GLHQVHLPGQ SFSGTGIGMS SEHSAALNGT HQEPNVFLPI PSTGHNKREA  540
PGTPEMLEFK VPQNISCTVT GEQVHQMKSS PTSMIKKFEE ELREAQLQRV LNPSDPSGML  600
ASHPISSLVN AIYGQTNPEM RGPNNYHPAD GVDNFKMPPD NSSYLDRESN KVPVEQMNQS  660
STIDPEPGNN DQIDEVKQQE NKLVEVNGKD KLAPEESKDG QENDHPGDMN MHGKVEEGSG  720
NKDEKAMRLF KNALIEFVKE ILKPTWKEGK MSREVHKTVV KKVVDKVTST TQGEHVPKTQ  780
EKIEQYLSYS KAKITKLVQA YVERILKNEA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15563RSRSRSRGR
25767RSRSRGRDRFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016441082.10.0PREDICTED: zinc finger CCCH domain-containing protein 55-like
TrEMBLA0A1S3XN440.0A0A1S3XN44_TOBAC; zinc finger CCCH domain-containing protein 55-like
STRINGXP_009629285.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.18e-13C3H family protein