PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016440640.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 266aa    MW: 31116.9 Da    PI: 8.8107
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016440640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.2e-171764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eE  ll ++vk++G g+W+++a   g++R +k+c++rw +yl
   XP_016440640.1 17 KGPWTAEENRLLFEYVKLHGEGRWSSVATVAGLKRNAKSCRLRWVNYL 64
                     79********************************************97 PP
2Myb_DNA-binding50.74.2e-1670114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g  T  E++l++++++++G++ W+tIa+ ++ gRt++++k++w+++
   XP_016440640.1  70 KGQITSHEEKLILELHARWGNR-WATIAKNLP-GRTDNEIKNYWRTH 114
                      577799****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.8631268IPR017930Myb domain
SuperFamilySSF466895.62E-2914111IPR009057Homeodomain-like
SMARTSM007173.6E-151666IPR001005SANT/Myb domain
PfamPF002491.6E-151764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-221871IPR009057Homeodomain-like
CDDcd001671.39E-101964No hitNo description
SMARTSM007171.2E-1469117IPR001005SANT/Myb domain
PROSITE profilePS5129418.94269119IPR017930Myb domain
PfamPF002494.3E-1471114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2372118IPR009057Homeodomain-like
CDDcd001673.43E-1074115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSKEICSWGM TKEGWRKGPW TAEENRLLFE YVKLHGEGRW SSVATVAGLK RNAKSCRLRW  60
VNYLRPDLKK GQITSHEEKL ILELHARWGN RWATIAKNLP GRTDNEIKNY WRTHFKKKTK  120
TSNNKSEISK ARLLKRQQLQ EQQQQQCNTD NDTNKVVSYN NNNKNYYASI LNKLGNRIVS  180
LLNENVNKVP TLPQGNQEME ISYPNTADQE QDDDFFYSIL NDYTPVPVLE SSSNEDIIWD  240
VLWNLDDFQC NFSTPTYDTN MAIPFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-261711927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009599527.20.0PREDICTED: myb-related protein 340-like isoform X1
RefseqXP_016440640.10.0PREDICTED: myb-related protein 340-like
RefseqXP_018625944.10.0PREDICTED: myb-related protein 340-like isoform X1
TrEMBLA0A1S3XKX50.0A0A1S3XKX5_TOBAC; myb-related protein 340-like
STRINGXP_009599527.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.15e-68myb domain protein 305