PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016440239.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 280aa MW: 31106.9 Da PI: 6.8838 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106 | 2.2e-33 | 25 | 79 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl XP_016440239.1 25 KPRLRWTPDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 79 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.646 | 22 | 82 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-32 | 22 | 80 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.68E-17 | 24 | 82 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-24 | 25 | 80 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.9E-9 | 27 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.5E-21 | 125 | 171 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MYSGGGGERG YGYENGGVVM TRDQKPRLRW TPDLHDRFVD AVTKLGGPDK ATPKSVLRLM 60 GLKGLTLYHL KSHLQKYRLG QQAKKQNAAE ENRENIGESC GQFSLHSSGP SSTSSSMNSM 120 RGEVPISQAL MCQIEVQNRL HEQLEVQQKL QMRIEAQGKY LQAIMDRAHK SLSTDMNSPS 180 SVEATSQLTD FNLALSSLMD CMHGDNRDET VAGKRTDDDT NKALPTSTYL REEEQKNNVN 240 IKLEEASISF DLNSRSSYDF IGMNSAALEA KPLSNGRLEI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-20 | 25 | 78 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-20 | 25 | 78 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-20 | 25 | 78 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-20 | 25 | 78 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009617645.1 | 0.0 | PREDICTED: myb family transcription factor PHL11-like | ||||
Refseq | XP_016440239.1 | 0.0 | PREDICTED: myb family transcription factor APL-like | ||||
Swissprot | C0SVS4 | 3e-82 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A1S3XK76 | 0.0 | A0A1S3XK76_TOBAC; myb family transcription factor APL-like | ||||
STRING | XP_009617645.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4416 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 2e-75 | G2-like family protein |
Publications ? help Back to Top | |||
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