PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016439820.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 694aa    MW: 75741.1 Da    PI: 7.4738
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016439820.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-07280300526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C++Gd C +aHg
  XP_016439820.1 280 PCPEFRK-GACQRGDMCEYAHG 300
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.8E-1518144IPR020683Ankyrin repeat-containing domain
PfamPF127963.9E-955128IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00515989IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.1E-1559139IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.67159158IPR020683Ankyrin repeat-containing domain
CDDcd002041.88E-1359137No hitNo description
PROSITE profilePS5008810.84694129IPR002110Ankyrin repeat
SMARTSM002480.0294126IPR002110Ankyrin repeat
SMARTSM003562.0E-5275301IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-5280300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.568280302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4308338IPR000571Zinc finger, CCCH-type
SMARTSM0035641310333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MTMNNLTVQT VDTFASLLEL AANNDIEAFK RWTERDLSSI HEAGQWYGRQ KGSKQMVLEH  60
RTPLMIAATY GSIDVLKLIL SLPDVDVNRS CGHDKSTALH CAVSGGSLNA AEAVKLLLGA  120
GADPKSKDVN GHCPIDVIVV SPNFLSVKSS LENLLKTGGI GDCKLRVSIA TSKSNSPPHS  180
PSCENRSPSS ASDSSSSPKS AKSNDTPVYS MPEKKEYPID PSLPDIKNNI YSTDEFRMFS  240
FKIRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACQ RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGT DCNRRVCFFA HTQEELRPLY VSTGSAVPSP RGSTAAANAM  360
DFAAAMGLIP GSPSSVSVMS PSPFSPPMSP SANGISSMGW PQQNVPALHL PGSFLHSSRL  420
RSSLNARDIP AADLNAYPDF DVQRQLLNEF SYLSQRNMSS NSLNCSPRPM SHTRANLEDL  480
FSAESSSPRY SDQALAQAGF SPIHKSAVCS QLQQQQSLLS PINTNFSPRN VDNPLLQASF  540
GVPSSGRMSP RAMEPISPRS PRASILAQRD KQHQFRSFSS RDLGSNVSAI VGSPADTWGT  600
AMGKPDWAVS TGEFCRLRRS SSFELANNGE EPDLSWVQSL VKESPPEMMK DKCVPHVSGP  660
TGAVADLGEG SMSSSQIDQS DQLSAWMEQM KLDQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016439818.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_016439819.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_016439820.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1S3XIS70.0A0A1S3XIS7_TOBAC; zinc finger CCCH domain-containing protein 30-like
STRINGXP_009804762.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]