PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016439186.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 454aa    MW: 50854.1 Da    PI: 7.3012
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016439186.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.3e-1711871799
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    ++p +fa+  ++   ++++  led+sg++W+v +  r ++g+  +++GW  F +++gLk gDf+vF++++ + f   v++f +
  XP_016439186.1 11 YFPPRFARLVSHL--TNQETYLEDSSGQKWKVGI--RIHKGSLAIREGWHAFSSEHGLKIGDFLVFHYIQGQHF--IVQIFGT 87
                    5788999777655..45589**************..999999***************************97777..9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.1E-12188IPR003340B3 DNA binding domain
PROSITE profilePS5086313.93188IPR003340B3 DNA binding domain
CDDcd100178.05E-17585No hitNo description
Gene3DG3DSA:2.40.330.105.4E-19690IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-20890IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-141186IPR003340B3 DNA binding domain
PROSITE profilePS508638.374351449IPR003340B3 DNA binding domain
SMARTSM010190.39353447IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-10361445IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-10364445IPR015300DNA-binding pseudobarrel domain
CDDcd100172.39E-7386445No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
PFTFYVQSFQ YFPPRFARLV SHLTNQETYL EDSSGQKWKV GIRIHKGSLA IREGWHAFSS  60
EHGLKIGDFL VFHYIQGQHF IVQIFGTSGC QKISFDNGTR TGKKRRRTNC KATSQDELLP  120
EIDINSRKKW NSTHSDTAVP ESEMADHEAV TTTFASTIDA DTGILEIVHE AEAISNILQG  180
EDGPRNHVST NSISQRESSL VDEVPVEMEL LSFQAPVHFL DIGITQTEKI SEPVNDILLL  240
GQKDENVHNM GLISSTSSAE KSGSHLVLPS NKESRCSNQA TREKSNKASH IDKRELKEMA  300
AKTDCSAEKL NGKEPKLIEK DGQGFLRAVS GNNKVIKSEP ADSGDTSFPD AGNFSCLLRV  360
DGRNFLELPQ SWPQVLTGRK KLEHSTIYLQ GPDDRPWPVT YHERAGTKVL ASRWALFTAA  420
YGIKPGDECR FQVLNLSERR FKVHIGHKLR CYSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016439186.10.0PREDICTED: B3 domain-containing protein Os02g0598200-like, partial
TrEMBLA0A1S3XGX90.0A0A1S3XGX9_TOBAC; B3 domain-containing protein Os02g0598200-like
STRINGXP_009774954.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-10B3 family protein