PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016439131.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 297aa    MW: 32419.3 Da    PI: 6.9719
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016439131.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1084.9e-341165155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  XP_016439131.1 11 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 65
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.167868IPR017930Myb domain
SuperFamilySSF466891.24E-171065IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-321066IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-251166IPR006447Myb domain, plants
PfamPF002491.1E-91364IPR001005SANT/Myb domain
PfamPF143792.7E-2398144IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEPINPSLAG KQRLRWTHEL HERFVDAVAQ LGGPDRATPK GVLRVMGVQG LTIYHVKSHL  60
QKYRLAKYLP DSSSDGKNSD KKESGDMLSS LDGSSAGVQI NEALKLQMEV QKRLHEQLEV  120
QRQLQLRIEA QGKYLKKIIE EQQRLSGVLS EVPVSGVTPS PAAGENGPES DNRTDPGTPA  180
PTSEYPLVDK PVQEHAPTKS LSIDQSFSSQ HEPLTPDSGC RETSPINSPK GERSSKKQRV  240
GAFTKADMLL PHQILESSLS SQYQQSNPVD FLASDQFNLS SGLSLGNEGS KVSGSNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-241068159Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-241068159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-241068159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-241068159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-241068159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-241068159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-241068159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-241068159Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0144620.0BT014462.1 Lycopersicon esculentum clone 133809F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016439131.10.0PREDICTED: myb family transcription factor APL-like
RefseqXP_016439139.10.0PREDICTED: myb family transcription factor APL-like
RefseqXP_016439145.10.0PREDICTED: myb family transcription factor APL-like
RefseqXP_016439152.10.0PREDICTED: myb family transcription factor APL-like
SwissprotQ9SJW01e-122PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A1S3XHH70.0A0A1S3XHH7_TOBAC; myb family transcription factor APL-like
STRINGXP_009602574.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27962451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.15e-84G2-like family protein