PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016438861.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 757aa MW: 86626.5 Da PI: 6.4735

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016438861.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.3	1.7e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak+ GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ HnHel XP_016438861.1 59 EFYCSFAKQSGFSIRRHRTRGKdGIGRGITRRDFTCHRGGYPQLKPSEDGKLQRNRKSSRCGCQAFMRIVKRAdfnVPEWRITGFSNVHNHELL 152 6*************999877456677****************9***************98887676789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-18	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.2E-22	275	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.188	551	587	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.2E-8	552	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.5E-6	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence Send to blast
MPEITSIAKE ISENGTDSSQ DDIGTVEEMP EDAILSRQTS VNLVPFIGQI FVSQDAAYEF 60 YCSFAKQSGF SIRRHRTRGK DGIGRGITRR DFTCHRGGYP QLKPSEDGKL QRNRKSSRCG 120 CQAFMRIVKR ADFNVPEWRI TGFSNVHNHE LLKSTEVQLL PAYCTMSPDD KSRICMFAKA 180 GMSVRQMLRL TELEKGVKLG CLPFTEVDVR NLLLSFRNVE QDNDPIDLLK MCKEMKDKDP 240 NFKYDYKIDC NNRLEHIAWS YASSMRLYEA FGDSIVFDTT HRLDAYDMLL GIWIGVDNHG 300 THCFFGCVLL RDENLQSFSW ALKTFLGFMN GKASGTILTD QNLWLKEAIA TEIPRAKHAF 360 CIWHIISRFS DWFSTFLGSQ YDNWKVEFHR LYKLHSIEEY EVGWNEMVET YKLDENKHIV 420 SLYALRSYWA LPFLRSYFFA GMTSTFQSET INTYIQRILS VQSVLDNFVE QIARVVGAKD 480 QAGGTHKVQR NVQKIPLKTG SPIESHAATV LTPYAFSKLQ EELVLAPQYA SLMVDDSYFI 540 VRHHTEMDGG YKVLWVPHEE FISCSCHNFE FTGILCRHVL RVLSTNNCFH IPDQYLPMRW 600 RECSSSLAKP AIFSLPSDNT GKIQLLHSMI STLITESVET EERLNVVCEE VYTVLSRIKG 660 FPTTSNGGNT IAYESPSDSL ILAEVEDSDG IGQSFACNPH EYINLEKLKE RGSRDGLDLY 720 RKRRHLSVLC CGQYGHDASD CPMMEGEDLN ADRLRFL

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence Send to blast

MPEITSIAKE ISENGTDSSQ DDIGTVEEMP EDAILSRQTS VNLVPFIGQI FVSQDAAYEF  60
YCSFAKQSGF SIRRHRTRGK DGIGRGITRR DFTCHRGGYP QLKPSEDGKL QRNRKSSRCG  120
CQAFMRIVKR ADFNVPEWRI TGFSNVHNHE LLKSTEVQLL PAYCTMSPDD KSRICMFAKA  180
GMSVRQMLRL TELEKGVKLG CLPFTEVDVR NLLLSFRNVE QDNDPIDLLK MCKEMKDKDP  240
NFKYDYKIDC NNRLEHIAWS YASSMRLYEA FGDSIVFDTT HRLDAYDMLL GIWIGVDNHG  300
THCFFGCVLL RDENLQSFSW ALKTFLGFMN GKASGTILTD QNLWLKEAIA TEIPRAKHAF  360
CIWHIISRFS DWFSTFLGSQ YDNWKVEFHR LYKLHSIEEY EVGWNEMVET YKLDENKHIV  420
SLYALRSYWA LPFLRSYFFA GMTSTFQSET INTYIQRILS VQSVLDNFVE QIARVVGAKD  480
QAGGTHKVQR NVQKIPLKTG SPIESHAATV LTPYAFSKLQ EELVLAPQYA SLMVDDSYFI  540
VRHHTEMDGG YKVLWVPHEE FISCSCHNFE FTGILCRHVL RVLSTNNCFH IPDQYLPMRW  600
RECSSSLAKP AIFSLPSDNT GKIQLLHSMI STLITESVET EERLNVVCEE VYTVLSRIKG  660
FPTTSNGGNT IAYESPSDSL ILAEVEDSDG IGQSFACNPH EYINLEKLKE RGSRDGLDLY  720
RKRRHLSVLC CGQYGHDASD CPMMEGEDLN ADRLRFL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975521	0.0	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016438861.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A1S3XG43	0.0	A0A1S3XG43_TOBAC; protein FAR1-RELATED SEQUENCE 11-like
STRING	XP_009789344.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13535	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]