PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016438751.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 186aa MW: 20374.5 Da PI: 10.562 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 259.8 | 1.6e-79 | 31 | 186 | 145 | 301 |
GAGA_bind 145 kekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGal....rqCYkWGnGGWqSaCC 235 +k+ k+q k+pk+k k+kk ++ +k +++++ +r++a++ks ++v+ng+++D+s +P+PvCsCtG+ +qCY+WG+GGWqSaCC XP_016438751.1 31 AKKRGAGKSQLLKSPKSK---KAKKATRIPKVESTPSV--PRARAPRKSAEVVINGITMDISVIPIPVCSCTGVAqxaaQQCYRWGCGGWQSACC 120 333444444444555555...55554445544444444..79*******************************8522337*************** PP GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 tt++S yPLP++tkrrg+RiagrKmS gaf+k+LekLa+eGy++sn++DLk +WAkHGtnkfvtir XP_016438751.1 121 TTNLSSYPLPMNTKRRGSRIAGRKMSLGAFTKVLEKLASEGYNFSNAIDLKPYWAKHGTNKFVTIR 186 *****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 2.1E-80 | 1 | 186 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 9.8E-83 | 4 | 186 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MQIHEQPNLV KVEPDPQLEE VCLERDIGGL AKKRGAGKSQ LLKSPKSKKA KKATRIPKVE 60 STPSVPRARA PRKSAEVVIN GITMDISVIP IPVCSCTGVA QXAAQQCYRW GCGGWQSACC 120 TTNLSSYPLP MNTKRRGSRI AGRKMSLGAF TKVLEKLASE GYNFSNAIDL KPYWAKHGTN 180 KFVTIR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016438751.1 | 1e-135 | PREDICTED: protein BASIC PENTACYSTEINE3-like | ||||
Swissprot | P0DH88 | 2e-63 | BBRA_ORYSJ; Barley B recombinant-like protein A | ||||
Swissprot | P0DH89 | 2e-63 | BBRB_ORYSJ; Barley B recombinant-like protein B | ||||
TrEMBL | A0A1S3XFH8 | 1e-134 | A0A1S3XFH8_TOBAC; protein BASIC PENTACYSTEINE3-like | ||||
STRING | XP_009761371.1 | 1e-120 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10048 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68120.1 | 5e-64 | basic pentacysteine 3 |
Publications ? help Back to Top | |||
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