PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016437608.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 176aa    MW: 20601.1 Da    PI: 5.7124
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016437608.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.35.5e-22969259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                    +D+y+WrKYG K++ +s++pr YYrCt++   +C+++k+++r +edp + ++tY g+H ++
  XP_016437608.1  9 EDEYEWRKYGHKVILNSKYPRCYYRCTYKydqECQATKRIQRIKEDPIIYQTTYFGHHICK 69
                    7***************************99999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.51366IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-22470IPR003657WRKY domain
SuperFamilySSF1182906.28E-22470IPR003657WRKY domain
SMARTSM007741.7E-30870IPR003657WRKY domain
PfamPF031066.7E-21969IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MMRESAKKED EYEWRKYGHK VILNSKYPRC YYRCTYKYDQ ECQATKRIQR IKEDPIIYQT  60
TYFGHHICKR SQKEPQRQIT ITPESSVVMR EYPPFETNPN VPCKKDQPPS SDNPTTKEED  120
EESKEQTDSN IWKDFMVSSP SVPAIMAADD ISTSLPGLYI DGIFGDFHFA AVTEFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-18969969OsWRKY45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016437608.11e-130PREDICTED: probable WRKY transcription factor 70 isoform X2
TrEMBLA0A1S3XCY41e-129A0A1S3XCY4_TOBAC; probable WRKY transcription factor 70 isoform X2
STRINGXP_009781810.11e-107(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.21e-23WRKY DNA-binding protein 67