PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016436508.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 289aa    MW: 33328.7 Da    PI: 4.4167
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016436508.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.73.9e-1870123356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++ ++q++ Le+ Fe ++++  e++ +LA++lgL+ rq+ +WFqNrRa++k
  XP_016436508.1  70 KKRRLLPNQVQFLEKSFEVDNKLEPERKVQLAQELGLQPRQIAIWFQNRRARYK 123
                     45578899*********************************************9 PP
2HD-ZIP_I/II123.78.5e-4069160192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl  +qv++LE+sFe ++kLeperKv+la+eLglqprq+a+WFqnrRAR+ktk lEkdy++Lk+++d+lk++ ++L ke+e+Lr+e++
  XP_016436508.1  69 EKKRRLLPNQVQFLEKSFEVDNKLEPERKVQLAQELGLQPRQIAIWFQNRRARYKTKLLEKDYDVLKASFDKLKDDYDTLFKENENLRNEVD 160
                     69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-1856124IPR009057Homeodomain-like
PROSITE profilePS5007117.18465125IPR001356Homeobox domain
SMARTSM003894.6E-1868129IPR001356Homeobox domain
PfamPF000461.8E-1570123IPR001356Homeobox domain
CDDcd000869.47E-1770125No hitNo description
Gene3DG3DSA:1.10.10.602.0E-1873132IPR009057Homeodomain-like
PRINTSPR000315.2E-696105IPR000047Helix-turn-helix motif
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PRINTSPR000315.2E-6105121IPR000047Helix-turn-helix motif
PfamPF021831.9E-14126166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MTTTNTVLHS EVLHNLWMSN SSPSFHGPTS MVNFEDGGGE ISKERSFFSP IDKEETSNDD  60
YDSCFHRPEK KRRLLPNQVQ FLEKSFEVDN KLEPERKVQL AQELGLQPRQ IAIWFQNRRA  120
RYKTKLLEKD YDVLKASFDK LKDDYDTLFK ENENLRNEVD LLKEKLLERE KGKENSEQSE  180
PINPVDAEAQ KATPIVVTSE VPSIQKVECK QEDASSAKSD VIDSDSPHYT DGNHSSNAFE  240
PEPSDFSQDE DDNLSKSFLC FPEIGDQIQA NSCNLGFQIE DQPCWFWQY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-118HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766848.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
RefseqXP_016436508.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLA0A1S3X9R90.0A0A1S3X9R9_TOBAC; homeobox-leucine zipper protein HAT5-like
TrEMBLA0A1U7VKH30.0A0A1U7VKH3_NICSY; homeobox-leucine zipper protein HAT5-like
STRINGXP_009766848.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.16e-43homeobox 1